Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB9K42_RS01020 | Genome accession | NZ_CP166747 |
| Coordinates | 229490..230026 (+) | Length | 178 a.a. |
| NCBI ID | WP_047459655.1 | Uniprot ID | A0AAW7F306 |
| Organism | Citrobacter koseri strain CRE191 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 224490..235026
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9K42_RS01005 (AB9K42_01005) | aphA | 225002..225715 (+) | 714 | WP_012134616.1 | acid phosphatase AphA | - |
| AB9K42_RS01010 (AB9K42_01010) | - | 225965..226321 (+) | 357 | WP_012134615.1 | MmcQ/YjbR family DNA-binding protein | - |
| AB9K42_RS01015 (AB9K42_01015) | uvrA | 226417..229239 (-) | 2823 | WP_012134614.1 | excinuclease ABC subunit UvrA | - |
| AB9K42_RS01020 (AB9K42_01020) | ssb | 229490..230026 (+) | 537 | WP_047459655.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| AB9K42_RS01025 (AB9K42_01025) | - | 230288..230719 (+) | 432 | WP_012134612.1 | universal stress protein | - |
| AB9K42_RS01030 (AB9K42_01030) | - | 231012..231266 (-) | 255 | WP_127891249.1 | hypothetical protein | - |
| AB9K42_RS01035 (AB9K42_01035) | - | 231263..231562 (-) | 300 | WP_158661208.1 | hypothetical protein | - |
| AB9K42_RS01040 (AB9K42_01040) | - | 231663..234380 (-) | 2718 | WP_370906110.1 | cation-transporting P-type ATPase | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19110.13 Da Isoelectric Point: 5.2358
>NTDB_id=1035123 AB9K42_RS01020 WP_047459655.1 229490..230026(+) (ssb) [Citrobacter koseri strain CRE191]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQS
APAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQS
APAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=1035123 AB9K42_RS01020 WP_047459655.1 229490..230026(+) (ssb) [Citrobacter koseri strain CRE191]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGTGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGTCAGTTGCGTACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAATACACCACTGAAGTGGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCTCCGGCTGGCGGCAATATGGGCGGCGGTCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAACAATCC
GCTCCGGCACCGTCTAACGAACCGCCAATGGATTTCGACGACGACATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGTGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGTCAGTTGCGTACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAATACACCACTGAAGTGGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCTCCGGCTGGCGGCAATATGGGCGGCGGTCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAACAATCC
GCTCCGGCACCGTCTAACGAACCGCCAATGGATTTCGACGACGACATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
75.556 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
46.111 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.111 |
100 |
0.466 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.667 |
100 |
0.371 |