Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUF19_RS01670 Genome accession   NZ_AP028067
Coordinates   350066..350629 (+) Length   187 a.a.
NCBI ID   WP_102436139.1    Uniprot ID   -
Organism   Vibrio sp. FE10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 345066..355629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS01655 uvrA 345073..347904 (-) 2832 WP_286295478.1 excinuclease ABC subunit UvrA -
  QUF19_RS01660 galU 348110..348982 (-) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QUF19_RS01665 qstR 349140..349787 (-) 648 WP_065105522.1 LuxR C-terminal-related transcriptional regulator Regulator
  QUF19_RS01670 ssb 350066..350629 (+) 564 WP_102436139.1 single-stranded DNA-binding protein Machinery gene
  QUF19_RS01675 csrD 350791..352806 (+) 2016 WP_286295481.1 RNase E specificity factor CsrD -
  QUF19_RS01680 - 352809..354251 (+) 1443 WP_286295482.1 MSHA biogenesis protein MshI -
  QUF19_RS01685 pilO 354251..354898 (+) 648 WP_102327010.1 type 4a pilus biogenesis protein PilO -
  QUF19_RS01690 - 354891..355220 (+) 330 WP_286295484.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20642.76 Da        Isoelectric Point: 5.2358

>NTDB_id=103505 QUF19_RS01670 WP_102436139.1 350066..350629(+) (ssb) [Vibrio sp. FE10]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNNQQQGGWGQPQQPQQQQQQYSAPAQQQPK
APQQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=103505 QUF19_RS01670 WP_102436139.1 350066..350629(+) (ssb) [Vibrio sp. FE10]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCCAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGACCGTTACACAACAGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGTGGTATGGGTAACAATAACCAAC
AGCAAGGTGGTTGGGGTCAGCCACAACAGCCACAACAACAGCAGCAACAATACAGTGCTCCAGCTCAACAGCAGCCGAAA
GCACCTCAACAACAAGCTCCACAGCAGGCTCAACCTCAATATAATGAGCCACCAATGGATTTTGATGATGACATCCCATT
TTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.423

100

0.813
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.578
  ssb Neisseria meningitidis MC58

46.774

99.465

0.465
  ssb Neisseria gonorrhoeae MS11

46.774

99.465

0.465

Multiple sequence alignment