Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QUF19_RS01665 Genome accession   NZ_AP028067
Coordinates   349140..349787 (-) Length   215 a.a.
NCBI ID   WP_065105522.1    Uniprot ID   A0A2J6VVH2
Organism   Vibrio sp. FE10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 344140..354787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS01655 uvrA 345073..347904 (-) 2832 WP_286295478.1 excinuclease ABC subunit UvrA -
  QUF19_RS01660 galU 348110..348982 (-) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QUF19_RS01665 qstR 349140..349787 (-) 648 WP_065105522.1 LuxR C-terminal-related transcriptional regulator Regulator
  QUF19_RS01670 ssb 350066..350629 (+) 564 WP_102436139.1 single-stranded DNA-binding protein Machinery gene
  QUF19_RS01675 csrD 350791..352806 (+) 2016 WP_286295481.1 RNase E specificity factor CsrD -
  QUF19_RS01680 - 352809..354251 (+) 1443 WP_286295482.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24941.06 Da        Isoelectric Point: 9.8409

>NTDB_id=103504 QUF19_RS01665 WP_065105522.1 349140..349787(-) (qstR) [Vibrio sp. FE10]
MRKSRYARTLHFICIDPSNTYLHVKEIEKFLSLTLFKMTPDDLMLFDRKQSNRILLVDYKEVPQLTNLHPNLPVMWKNHE
IILFNVPKALPTSELITFGVLKGLFYNTEEKAKIAKGLEEVINGDNWLPRKVASQLLFYYRNIVSTNTTPTNVDLTIREL
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=103504 QUF19_RS01665 WP_065105522.1 349140..349787(-) (qstR) [Vibrio sp. FE10]
ATGAGAAAATCTCGATATGCTCGCACTTTGCATTTTATCTGTATCGATCCGAGTAACACCTATTTGCATGTTAAAGAGAT
AGAAAAGTTTTTGTCTCTAACCCTTTTCAAGATGACACCAGATGATCTGATGTTATTTGACCGAAAGCAGAGCAACCGAA
TTTTGCTCGTTGATTACAAAGAGGTCCCTCAATTAACGAACCTTCATCCAAATCTACCTGTGATGTGGAAAAATCATGAG
ATCATTCTGTTCAACGTCCCCAAGGCACTCCCTACATCGGAGCTGATTACGTTTGGCGTATTAAAAGGTCTGTTTTACAA
CACTGAAGAGAAAGCCAAAATAGCGAAGGGACTTGAAGAGGTGATCAATGGAGACAATTGGCTGCCTAGAAAGGTGGCAA
GCCAATTGCTGTTTTACTATCGAAACATCGTGAGCACCAATACAACCCCCACCAATGTCGACTTAACCATTAGAGAGCTG
CAAGTGATTCGTTGTCTTCAATCAGGTTCATCAAACACCCAGATAGCCGATGACTTGTTTATTAGCGAGTTCACGGTCAA
ATCTCACCTTTATCAGATATTTCGTAAGCTGGCCGTTAAAAATCGAGTCCAAGCCATCGCATGGGCTAACCAGAACCTGC
TTGCATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6VVH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.884

100

0.549
  qstR Vibrio parahaemolyticus RIMD 2210633

53.953

100

0.54
  qstR Vibrio cholerae strain A1552

49.533

99.535

0.493

Multiple sequence alignment