Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACA027_RS01150 Genome accession   NZ_CP166730
Coordinates   271527..273026 (-) Length   499 a.a.
NCBI ID   WP_370680587.1    Uniprot ID   -
Organism   Comamonas sp. GB3 AK4-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 266527..278026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA027_RS01135 (ACA027_01135) - 267071..268258 (-) 1188 WP_370680584.1 YbfB/YjiJ family MFS transporter -
  ACA027_RS01140 (ACA027_01140) - 268362..269288 (+) 927 WP_370680585.1 LysR family transcriptional regulator -
  ACA027_RS01145 (ACA027_01145) - 269481..271301 (+) 1821 WP_370680586.1 DUF3413 domain-containing protein -
  ACA027_RS01150 (ACA027_01150) comM 271527..273026 (-) 1500 WP_370680587.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACA027_RS01155 (ACA027_01155) - 273337..274068 (+) 732 WP_370680588.1 TorF family putative porin -
  ACA027_RS01160 (ACA027_01160) - 274088..274426 (+) 339 WP_370680589.1 P-II family nitrogen regulator -
  ACA027_RS01165 (ACA027_01165) - 274453..275820 (+) 1368 WP_370680590.1 ammonium transporter -
  ACA027_RS01170 (ACA027_01170) glcE 276066..277193 (+) 1128 WP_370680591.1 glycolate oxidase subunit GlcE -
  ACA027_RS01175 (ACA027_01175) - 277198..277977 (+) 780 WP_370680592.1 YoaK family protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52435.11 Da        Isoelectric Point: 7.6130

>NTDB_id=1035048 ACA027_RS01150 WP_370680587.1 271527..273026(-) (comM) [Comamonas sp. GB3 AK4-5]
MGLALVPSRALLGLHAPRVTVEVHLANGLPCLTLVGLADTEVKEARERVRSAIANAGLEFPHSRRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDATQLSRYEFAGELSLSGALRPVRGALATALALQLQGDALPLVLPQESASEAALVPGSTVYGA
THLLDVVRALLPQGGEPLAPAMATPHAPAEAPPDLAEVQGQAAAKRALEIAAAGAHGLLLIGPPGSGKSMLAQRLAGLLP
PQTPQEALEAAAIASLTGDFDAATWGQRHTVAPHHTASAVALVGGGSPPRPGAISRAHQGILFLDEFPEFARSALEALRE
PLETGRIQIARAAQHAEFPARFQLVAAMNPCPCGLRGSSRCRCTPDQVTRYQARLSGPLLDRIDLQVEVPALPPAELLQP
VQSEPSATVQARVIQARQRALQRQGHANQWLLPSALQQHLQLDDAAQALVHKAAERLAWSARATHRALKVARTIADLADS
ETVQAAHVAEALQYRRGVK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1035048 ACA027_RS01150 WP_370680587.1 271527..273026(-) (comM) [Comamonas sp. GB3 AK4-5]
ATGGGTTTGGCCCTGGTCCCCAGCCGTGCCCTGCTGGGCCTGCATGCACCGCGCGTGACGGTGGAAGTCCACCTGGCTAA
CGGCCTGCCCTGTCTGACCCTTGTCGGTCTGGCGGATACCGAGGTCAAGGAAGCACGCGAGCGCGTGCGCAGCGCCATCG
CCAATGCGGGGCTGGAGTTCCCGCACAGCCGGCGCATCACCGTCAACCTGGCCCCGGCCGATCTGCCCAAGGACTCGGGC
CGCTTCGACCTGCCGATTGCCCTGGGCATTCTGGCGGCCAGCGGGCAAATCGACGCCACACAGCTTTCGCGCTATGAATT
TGCCGGCGAGCTGTCGCTGTCCGGCGCGCTGCGCCCCGTGCGCGGCGCCCTGGCCACCGCGCTGGCCCTGCAGCTGCAAG
GCGATGCCCTGCCTCTGGTACTGCCCCAGGAAAGTGCCAGCGAGGCCGCCCTGGTGCCCGGCAGCACCGTCTATGGCGCA
ACGCATCTGCTGGATGTGGTGCGTGCCCTGCTGCCCCAGGGGGGCGAGCCCCTGGCGCCCGCCATGGCCACGCCCCATGC
CCCAGCAGAGGCCCCTCCCGATCTGGCCGAGGTACAGGGCCAGGCGGCCGCCAAGCGCGCGCTGGAGATTGCCGCGGCCG
GCGCCCACGGGCTGCTGCTGATCGGCCCACCCGGCAGCGGCAAGTCCATGCTGGCCCAGCGCCTGGCCGGCCTGCTGCCC
CCGCAAACCCCGCAGGAGGCGCTGGAAGCCGCCGCCATCGCCAGCCTCACCGGCGACTTCGACGCCGCCACCTGGGGCCA
GCGCCACACGGTAGCGCCCCACCACACGGCCAGCGCCGTGGCCCTGGTGGGTGGAGGCTCGCCCCCCAGGCCTGGGGCCA
TCTCACGGGCCCACCAGGGTATTTTGTTTTTGGATGAATTTCCCGAATTCGCCCGCAGCGCGCTGGAGGCGCTGCGAGAG
CCGCTGGAAACCGGGCGCATACAGATTGCCCGCGCCGCCCAACATGCGGAATTTCCTGCGCGCTTTCAACTGGTTGCCGC
CATGAATCCCTGCCCCTGCGGCCTGCGGGGCAGCAGCCGCTGCCGCTGCACGCCCGACCAGGTGACGCGCTACCAGGCCC
GGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCAGGTGGAGGTACCGGCCCTGCCTCCCGCAGAGCTGCTGCAACCC
GTGCAAAGCGAGCCCAGTGCCACGGTGCAGGCCCGTGTCATCCAGGCCCGCCAGCGCGCCTTGCAGCGACAAGGCCATGC
CAACCAGTGGTTGCTGCCCAGCGCGTTGCAGCAGCATCTGCAGCTGGACGATGCCGCCCAGGCCCTGGTGCACAAAGCGG
CCGAACGCCTGGCCTGGTCCGCCCGCGCCACCCACCGGGCACTGAAGGTGGCGCGCACCATTGCAGACCTGGCAGACAGC
GAGACCGTGCAGGCCGCCCATGTGGCCGAAGCGCTGCAGTATCGGCGAGGGGTGAAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.807

99.8

0.517
  comM Vibrio campbellii strain DS40M4

51.107

99.599

0.509
  comM Haemophilus influenzae Rd KW20

50.397

100

0.509
  comM Glaesserella parasuis strain SC1401

50.398

100

0.507
  comM Legionella pneumophila str. Paris

47.732

100

0.485
  comM Legionella pneumophila strain ERS1305867

47.732

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.97

100

0.435

Multiple sequence alignment