Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB9V48_RS21845 Genome accession   NZ_CP166683
Coordinates   4536804..4538324 (+) Length   506 a.a.
NCBI ID   WP_000058953.1    Uniprot ID   -
Organism   Escherichia fergusonii strain EFSXRJ10     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4531804..4543324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9V48_RS21820 (AB9V48_21895) ilvE 4533358..4534287 (-) 930 WP_000208520.1 branched-chain-amino-acid transaminase -
  AB9V48_RS21825 (AB9V48_21900) ilvM 4534307..4534570 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  AB9V48_RS21830 (AB9V48_21905) ilvG 4534567..4536213 (-) 1647 WP_001012596.1 acetolactate synthase 2 catalytic subunit -
  AB9V48_RS21835 (AB9V48_21910) ilvX 4536216..4536266 (-) 51 WP_001387183.1 peptide IlvX -
  AB9V48_RS21840 (AB9V48_21915) ilvL 4536353..4536451 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AB9V48_RS21845 (AB9V48_21920) comM 4536804..4538324 (+) 1521 WP_000058953.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB9V48_RS21850 (AB9V48_21925) maoP 4538349..4538687 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  AB9V48_RS21855 (AB9V48_21930) hdfR 4538806..4539645 (+) 840 WP_000379253.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55217.37 Da        Isoelectric Point: 7.6190

>NTDB_id=1034950 AB9V48_RS21845 WP_000058953.1 4536804..4538324(+) (comM) [Escherichia fergusonii strain EFSXRJ10]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTAKKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLLHLGLSIRAWQRLLKVSRTIADIDQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1034950 AB9V48_RS21845 WP_000058953.1 4536804..4538324(+) (comM) [Escherichia fergusonii strain EFSXRJ10]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAAAAAGTTAGATGAATATGAATTAGT
TGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGACACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAACGCTGCGTTATCTCAACCGACTCTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCGCCACCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGCCCGGAAATACGCCAATTCTGCAAGCTTGAGAGCGAAGACGCCCAGTGGCTGGAAGAAACGCTGCTTCATC
TGGGGTTATCGATTCGTGCCTGGCAACGATTACTGAAGGTATCGAGAACTATTGCTGATATTGATCAGTCTGACGTCATC
ACACGCCAGCATTTACAGGAGGCAGTTAGCTATCGAGCTATCGATCGCTTGCTTATTCATTTACAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.904

100

0.595
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio cholerae strain A1552

58.964

99.209

0.585
  comM Vibrio campbellii strain DS40M4

57.968

99.209

0.575
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.445

Multiple sequence alignment