Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB6N07_RS20395 Genome accession   NZ_CP166625
Coordinates   4395727..4396254 (-) Length   175 a.a.
NCBI ID   WP_370674886.1    Uniprot ID   -
Organism   Pleomorphomonas sp. PLEO     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4390727..4401254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N07_RS20365 (AB6N07_20365) - 4391559..4391990 (+) 432 WP_370674880.1 metallopeptidase family protein -
  AB6N07_RS20370 (AB6N07_20370) - 4391987..4392859 (+) 873 WP_370674881.1 MBL fold metallo-hydrolase -
  AB6N07_RS20375 (AB6N07_20375) - 4392884..4393726 (-) 843 WP_370674882.1 SDR family oxidoreductase -
  AB6N07_RS20380 (AB6N07_20380) - 4393856..4394227 (+) 372 WP_370674883.1 winged helix-turn-helix transcriptional regulator -
  AB6N07_RS20385 (AB6N07_20385) - 4394321..4395364 (+) 1044 WP_370674884.1 zinc-dependent alcohol dehydrogenase family protein -
  AB6N07_RS20390 (AB6N07_20390) - 4395368..4395619 (-) 252 WP_370674885.1 hypothetical protein -
  AB6N07_RS20395 (AB6N07_20395) ssb 4395727..4396254 (-) 528 WP_370674886.1 single-stranded DNA-binding protein Machinery gene
  AB6N07_RS20400 (AB6N07_20400) uvrA 4396688..4399600 (+) 2913 WP_370674887.1 excinuclease ABC subunit UvrA -
  AB6N07_RS20405 (AB6N07_20405) folP 4399890..4400708 (+) 819 WP_370674888.1 dihydropteroate synthase -
  AB6N07_RS20410 (AB6N07_20410) folB 4400705..4401076 (+) 372 WP_370674889.1 dihydroneopterin aldolase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18967.82 Da        Isoelectric Point: 5.3881

>NTDB_id=1034867 AB6N07_RS20395 WP_370674886.1 4395727..4396254(-) (ssb) [Pleomorphomonas sp. PLEO]
MAGSVNKVILIGNLGRDPEVRRMGSGDAVVNLRIATSENWRDRQSGERKERTEWHSVVIFNENLAKVAEQYLKKGSKVYI
EGQLQTRKWTDQSGQERYSTEVVLQRFRGELTILDSRGGEGGGRGEGDFGDAGSDYGSSGPMERAPAKSSGGGRPQGGGA
PASNFSSDLDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1034867 AB6N07_RS20395 WP_370674886.1 4395727..4396254(-) (ssb) [Pleomorphomonas sp. PLEO]
ATGGCAGGCAGCGTCAACAAGGTCATCCTGATCGGCAATCTCGGACGTGATCCCGAGGTGCGGCGGATGGGGTCGGGCGA
TGCCGTGGTCAACCTGCGTATCGCGACCTCCGAAAACTGGCGCGACCGTCAGAGCGGCGAGCGCAAGGAACGCACCGAGT
GGCACTCGGTGGTGATCTTCAACGAAAATCTGGCCAAGGTCGCCGAGCAGTACCTGAAGAAGGGCTCCAAGGTTTACATC
GAGGGGCAGCTTCAGACCCGCAAGTGGACTGACCAGTCCGGCCAAGAGCGCTATTCCACGGAAGTGGTGCTGCAGCGCTT
CCGTGGCGAACTGACCATTCTCGACAGTCGTGGCGGCGAAGGTGGTGGCCGCGGCGAGGGCGATTTTGGCGATGCCGGTT
CGGATTACGGCTCCTCCGGCCCGATGGAACGCGCTCCTGCCAAGTCGTCGGGCGGTGGGCGTCCCCAGGGTGGCGGCGCT
CCGGCCTCCAACTTCTCGTCCGACCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.857

100

0.549
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.514
  ssb Neisseria meningitidis MC58

44.444

100

0.457
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.434

Multiple sequence alignment