Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB6K15_RS18050 Genome accession   NZ_CP166492
Coordinates   3646047..3646382 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain BC248L1-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3641047..3651382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6K15_RS18000 (AB6K15_17990) comGC 3641280..3641546 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  AB6K15_RS18005 (AB6K15_17995) comGD 3641536..3641973 (+) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB6K15_RS18010 (AB6K15_18000) comGE 3641957..3642271 (+) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AB6K15_RS18015 (AB6K15_18005) comGF 3642180..3642680 (+) 501 WP_257899725.1 competence type IV pilus minor pilin ComGF -
  AB6K15_RS18020 (AB6K15_18010) comGG 3642681..3643058 (+) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB6K15_RS18025 (AB6K15_18015) - 3643115..3643294 (+) 180 WP_003153093.1 YqzE family protein -
  AB6K15_RS18030 (AB6K15_18020) - 3643334..3643663 (-) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AB6K15_RS18035 (AB6K15_18025) tapA 3643922..3644593 (+) 672 WP_124934997.1 amyloid fiber anchoring/assembly protein TapA -
  AB6K15_RS18040 (AB6K15_18030) sipW 3644565..3645149 (+) 585 WP_015240205.1 signal peptidase I SipW -
  AB6K15_RS18045 (AB6K15_18035) tasA 3645214..3645999 (+) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB6K15_RS18050 (AB6K15_18040) sinR 3646047..3646382 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB6K15_RS18055 (AB6K15_18045) sinI 3646416..3646589 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB6K15_RS18060 (AB6K15_18050) - 3646766..3647560 (-) 795 WP_076424968.1 YqhG family protein -
  AB6K15_RS18065 (AB6K15_18055) - 3647582..3649252 (-) 1671 WP_124934996.1 DEAD/DEAH box helicase -
  AB6K15_RS18070 (AB6K15_18060) gcvT 3649676..3650776 (+) 1101 WP_025284994.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1034778 AB6K15_RS18050 WP_003153104.1 3646047..3646382(-) (sinR) [Bacillus velezensis strain BC248L1-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1034778 AB6K15_RS18050 WP_003153104.1 3646047..3646382(-) (sinR) [Bacillus velezensis strain BC248L1-1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment