Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AB6K15_RS18000 | Genome accession | NZ_CP166492 |
| Coordinates | 3641280..3641546 (+) | Length | 88 a.a. |
| NCBI ID | WP_042635730.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain BC248L1-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3636280..3646546
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB6K15_RS17980 (AB6K15_17970) | - | 3636548..3637849 (-) | 1302 | WP_021494315.1 | hemolysin family protein | - |
| AB6K15_RS17985 (AB6K15_17975) | - | 3637995..3638945 (+) | 951 | WP_007408319.1 | magnesium transporter CorA family protein | - |
| AB6K15_RS17990 (AB6K15_17980) | comGA | 3639139..3640209 (+) | 1071 | WP_003153083.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB6K15_RS17995 (AB6K15_17985) | comGB | 3640196..3641233 (+) | 1038 | WP_094031834.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AB6K15_RS18000 (AB6K15_17990) | comGC | 3641280..3641546 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB6K15_RS18005 (AB6K15_17995) | comGD | 3641536..3641973 (+) | 438 | WP_043020787.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AB6K15_RS18010 (AB6K15_18000) | comGE | 3641957..3642271 (+) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | - |
| AB6K15_RS18015 (AB6K15_18005) | comGF | 3642180..3642680 (+) | 501 | WP_257899725.1 | competence type IV pilus minor pilin ComGF | - |
| AB6K15_RS18020 (AB6K15_18010) | comGG | 3642681..3643058 (+) | 378 | WP_012117980.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AB6K15_RS18025 (AB6K15_18015) | - | 3643115..3643294 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| AB6K15_RS18030 (AB6K15_18020) | - | 3643334..3643663 (-) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| AB6K15_RS18035 (AB6K15_18025) | tapA | 3643922..3644593 (+) | 672 | WP_124934997.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AB6K15_RS18040 (AB6K15_18030) | sipW | 3644565..3645149 (+) | 585 | WP_015240205.1 | signal peptidase I SipW | - |
| AB6K15_RS18045 (AB6K15_18035) | tasA | 3645214..3645999 (+) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
| AB6K15_RS18050 (AB6K15_18040) | sinR | 3646047..3646382 (-) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 9721.32 Da Isoelectric Point: 6.2027
>NTDB_id=1034775 AB6K15_RS18000 WP_042635730.1 3641280..3641546(+) (comGC) [Bacillus velezensis strain BC248L1-1]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
Nucleotide
Download Length: 267 bp
>NTDB_id=1034775 AB6K15_RS18000 WP_042635730.1 3641280..3641546(+) (comGC) [Bacillus velezensis strain BC248L1-1]
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
74.648 |
80.682 |
0.602 |