Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | AB6K15_RS17990 | Genome accession | NZ_CP166492 |
| Coordinates | 3639139..3640209 (+) | Length | 356 a.a. |
| NCBI ID | WP_003153083.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain BC248L1-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3634139..3645209
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB6K15_RS17960 (AB6K15_17950) | - | 3634610..3634855 (-) | 246 | WP_003153078.1 | DUF2626 domain-containing protein | - |
| AB6K15_RS17965 (AB6K15_17955) | - | 3635093..3635473 (+) | 381 | WP_003153079.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| AB6K15_RS17975 (AB6K15_17965) | - | 3635680..3636510 (+) | 831 | WP_007408317.1 | STAS domain-containing protein | - |
| AB6K15_RS17980 (AB6K15_17970) | - | 3636548..3637849 (-) | 1302 | WP_021494315.1 | hemolysin family protein | - |
| AB6K15_RS17985 (AB6K15_17975) | - | 3637995..3638945 (+) | 951 | WP_007408319.1 | magnesium transporter CorA family protein | - |
| AB6K15_RS17990 (AB6K15_17980) | comGA | 3639139..3640209 (+) | 1071 | WP_003153083.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB6K15_RS17995 (AB6K15_17985) | comGB | 3640196..3641233 (+) | 1038 | WP_094031834.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AB6K15_RS18000 (AB6K15_17990) | comGC | 3641280..3641546 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB6K15_RS18005 (AB6K15_17995) | comGD | 3641536..3641973 (+) | 438 | WP_043020787.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AB6K15_RS18010 (AB6K15_18000) | comGE | 3641957..3642271 (+) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | - |
| AB6K15_RS18015 (AB6K15_18005) | comGF | 3642180..3642680 (+) | 501 | WP_257899725.1 | competence type IV pilus minor pilin ComGF | - |
| AB6K15_RS18020 (AB6K15_18010) | comGG | 3642681..3643058 (+) | 378 | WP_012117980.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AB6K15_RS18025 (AB6K15_18015) | - | 3643115..3643294 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| AB6K15_RS18030 (AB6K15_18020) | - | 3643334..3643663 (-) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| AB6K15_RS18035 (AB6K15_18025) | tapA | 3643922..3644593 (+) | 672 | WP_124934997.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AB6K15_RS18040 (AB6K15_18030) | sipW | 3644565..3645149 (+) | 585 | WP_015240205.1 | signal peptidase I SipW | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 40529.85 Da Isoelectric Point: 9.4729
>NTDB_id=1034773 AB6K15_RS17990 WP_003153083.1 3639139..3640209(+) (comGA) [Bacillus velezensis strain BC248L1-1]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD
Nucleotide
Download Length: 1071 bp
>NTDB_id=1034773 AB6K15_RS17990 WP_003153083.1 3639139..3640209(+) (comGA) [Bacillus velezensis strain BC248L1-1]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTAAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCAGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGAGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
TATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTAAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCAGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGAGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
TATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
82.022 |
100 |
0.82 |
| pilB | Glaesserella parasuis strain SC1401 |
38.793 |
97.753 |
0.379 |
| pilF | Thermus thermophilus HB27 |
37.892 |
98.596 |
0.374 |