Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB9R84_RS15000 Genome accession   NZ_CP166304
Coordinates   3119909..3121420 (+) Length   503 a.a.
NCBI ID   WP_395545783.1    Uniprot ID   -
Organism   Oceanimonas smirnovii strain OS2020-133     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3114909..3126420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9R84_RS14985 (AB9R84_14975) - 3116682..3117605 (-) 924 WP_395545780.1 branched-chain amino acid transaminase -
  AB9R84_RS14990 (AB9R84_14980) ilvM 3117617..3117877 (-) 261 WP_418139543.1 acetolactate synthase 2 small subunit -
  AB9R84_RS14995 (AB9R84_14985) ilvG 3117874..3119523 (-) 1650 WP_019934632.1 acetolactate synthase 2 catalytic subunit -
  AB9R84_RS15000 (AB9R84_14990) comM 3119909..3121420 (+) 1512 WP_395545783.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB9R84_RS15005 (AB9R84_14995) - 3121478..3122080 (-) 603 WP_019934630.1 thiol:disulfide interchange protein DsbA/DsbL -
  AB9R84_RS15010 (AB9R84_15000) - 3122122..3123090 (-) 969 WP_346351273.1 serine/threonine protein kinase -
  AB9R84_RS15015 (AB9R84_15005) ccoG 3123150..3124568 (-) 1419 WP_019934628.1 cytochrome c oxidase accessory protein CcoG -
  AB9R84_RS15020 (AB9R84_15010) cueR 3124698..3125111 (-) 414 WP_019934627.1 Cu(I)-responsive transcriptional regulator -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54317.41 Da        Isoelectric Point: 7.3752

>NTDB_id=1034149 AB9R84_RS15000 WP_395545783.1 3119909..3121420(+) (comM) [Oceanimonas smirnovii strain OS2020-133]
MSLAVVFARASLGVSAPLVTVEAHLANGLPAFNIVGLPETTVKEARDRVRSALINAGFEFPARRITVNLAPADLPKDGGR
FDLPIAMAILAASEQIPDSSLDGLEFLGELALTGELRGIKGVLPAVLAARDSDRRLIIPAANGPEAGLLTPCPALLAGHL
LNITAWLQQEGELVHPEPVICTEHAGNNCLSDVIGQETGKRALEIAAAGEHNLLFLGPPGTGKSMLASRLSDLLPPMTET
EALEAAAVRSISGQPLDPERWRQRPFRQPHHSSSAAALVGGGSYPKPGEISLAHHGVLFLDELTEFERRVLDALREPLET
GNISISRAAHSVTFPARFQLIGAMNPSPCGHYQDGLSRSSPEQILRYLGKISGPFVDRFDLSVEIPLLPPGELSRPRQKS
ERSAKVRARVLAARERQQQRAGKPNARLSAAELDKLCPLAASDAEFLEQALQHMKLSIRAWHKLIRVARTIADLAGDSHI
GREHLMEALGYRAMDRLLTRLRQ

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=1034149 AB9R84_RS15000 WP_395545783.1 3119909..3121420(+) (comM) [Oceanimonas smirnovii strain OS2020-133]
ATGTCTCTTGCGGTTGTGTTTGCACGGGCCAGTTTGGGAGTATCCGCACCACTGGTTACGGTTGAAGCTCATTTGGCCAA
TGGTTTGCCGGCTTTCAACATAGTGGGCTTACCGGAAACCACGGTAAAGGAAGCCAGAGATCGTGTACGCAGTGCACTGA
TTAATGCTGGCTTTGAGTTCCCTGCCCGGCGTATTACCGTTAATCTGGCACCAGCAGACCTGCCCAAGGATGGTGGCCGT
TTTGATCTGCCTATCGCCATGGCCATTCTCGCGGCCTCGGAGCAAATTCCCGATTCTTCCCTCGATGGTCTGGAATTTCT
TGGTGAACTGGCACTGACCGGTGAATTACGTGGTATCAAGGGTGTCTTGCCTGCCGTACTCGCCGCCAGAGACAGTGACA
GAAGACTGATCATTCCTGCAGCCAACGGTCCCGAAGCCGGCCTGCTTACTCCATGCCCAGCTTTGCTGGCAGGGCATCTG
CTTAACATTACCGCTTGGCTGCAGCAGGAGGGAGAGCTGGTACATCCCGAGCCGGTTATCTGTACCGAACATGCCGGCAA
TAACTGTTTAAGTGATGTGATCGGCCAGGAAACAGGCAAACGGGCGCTGGAAATTGCTGCCGCGGGTGAGCACAACCTGT
TATTTTTGGGGCCACCCGGCACCGGTAAAAGCATGCTTGCCAGCCGGTTATCAGATTTACTGCCCCCCATGACAGAAACC
GAGGCGCTGGAAGCCGCCGCTGTTCGCTCCATCAGTGGTCAGCCACTGGATCCTGAACGCTGGCGGCAGCGGCCGTTTCG
TCAGCCTCATCATTCTTCTTCAGCTGCAGCCCTGGTAGGCGGAGGCAGTTACCCAAAACCGGGAGAGATCTCTCTGGCCC
ACCATGGCGTGCTGTTTCTTGATGAGCTGACCGAGTTTGAACGCCGGGTGCTGGATGCGCTGCGCGAGCCATTGGAAACC
GGCAATATCAGTATTTCCCGGGCTGCTCACAGTGTCACTTTTCCTGCTCGTTTTCAGTTGATTGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATCAGGACGGGCTGAGCCGCAGCTCACCGGAGCAGATTTTGCGCTATCTCGGCAAAATCTCCGGCC
CCTTTGTTGATCGCTTTGATCTGTCGGTAGAGATCCCTCTGCTGCCACCCGGAGAGCTGAGCCGGCCCCGGCAAAAGTCA
GAACGCTCAGCCAAGGTACGAGCTCGCGTGCTGGCGGCCCGAGAGCGGCAACAGCAAAGAGCGGGCAAACCCAATGCACG
CCTGAGTGCCGCTGAACTGGACAAGCTGTGCCCATTAGCGGCCAGTGATGCAGAATTTCTGGAACAGGCACTGCAACACA
TGAAGCTGTCTATTCGCGCATGGCATAAGCTCATCAGGGTTGCCCGCACCATTGCCGATTTGGCCGGTGACAGCCATATT
GGTCGAGAACACCTGATGGAAGCGCTGGGCTATCGTGCCATGGATCGGTTACTGACAAGACTTCGTCAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.636

100

0.606
  comM Haemophilus influenzae Rd KW20

59.684

100

0.6
  comM Vibrio campbellii strain DS40M4

59.761

99.801

0.596
  comM Glaesserella parasuis strain SC1401

58.153

100

0.588
  comM Legionella pneumophila str. Paris

49.698

98.807

0.491
  comM Legionella pneumophila strain ERS1305867

49.698

98.807

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.406

100

0.427

Multiple sequence alignment