Detailed information NTG1033727

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: DXE59_RS01240
• Genome accession: NZ_LT992467
• Coordinates: 266060..267064 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005766.1
• Uniprot ID: -
• Organism: Staphylococcus aureus isolate 16_LA_309
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 261060..272064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXE59_RS01225	yajC	263592..263852 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
DXE59_RS01230	tgt	263871..265010 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
DXE59_RS01235	queA	265033..266058 (-)	1026	WP_001019177.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
DXE59_RS01240	ruvB	266060..267064 (-)	1005	WP_001005766.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
DXE59_RS01245	ruvA	267096..267698 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
DXE59_RS01250	-	267712..268167 (-)	456	WP_000368902.1	ACT domain-containing protein	-
DXE59_RS01255	obgE	268180..269472 (-)	1293	WP_000496090.1	GTPase ObgE	-
DXE59_RS01260	rpmA	269959..270243 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
DXE59_RS01265	-	270255..270575 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
DXE59_RS01270	rplU	270581..270889 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
DXE59_RS01275	mreD	271376..271906 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37687.98 Da
• Isoelectric Point: 5.0865

>NTDB_id=1033727 DXE59_RS01240 WP_001005766.1 266060..267064(-) (ruvB) [Staphylococcus aureus isolate 16_LA_309]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=1033727 DXE59_RS01240 WP_001005766.1 266060..267064(-) (ruvB) [Staphylococcus aureus isolate 16_LA_309]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATTATTGCCAATGAAATGGAAGTAAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTAGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATGCGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.644	97.605	0.641
ruvB	Streptococcus pneumoniae TIGR4	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae R6	57.576	98.802	0.569
ruvB	Streptococcus pneumoniae D39	57.576	98.802	0.569
ruvB	Helicobacter pylori 26695	56.173	97.006	0.545
ruvB	Synechocystis sp. PCC 6803	54.062	95.808	0.518