Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DXE59_RS01245 Genome accession   NZ_LT992467
Coordinates   267096..267698 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus isolate 16_LA_309     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 262096..272698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE59_RS01225 yajC 263592..263852 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  DXE59_RS01230 tgt 263871..265010 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  DXE59_RS01235 queA 265033..266058 (-) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DXE59_RS01240 ruvB 266060..267064 (-) 1005 WP_001005766.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  DXE59_RS01245 ruvA 267096..267698 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  DXE59_RS01250 - 267712..268167 (-) 456 WP_000368902.1 ACT domain-containing protein -
  DXE59_RS01255 obgE 268180..269472 (-) 1293 WP_000496090.1 GTPase ObgE -
  DXE59_RS01260 rpmA 269959..270243 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  DXE59_RS01265 - 270255..270575 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  DXE59_RS01270 rplU 270581..270889 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  DXE59_RS01275 mreD 271376..271906 (-) 531 WP_001259929.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=1033728 DXE59_RS01245 WP_000271547.1 267096..267698(-) (ruvA) [Staphylococcus aureus isolate 16_LA_309]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1033728 DXE59_RS01245 WP_000271547.1 267096..267698(-) (ruvA) [Staphylococcus aureus isolate 16_LA_309]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAGCGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425