Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8599_RS15675 Genome accession   NZ_CP166194
Coordinates   3481969..3483495 (-) Length   508 a.a.
NCBI ID   WP_407331781.1    Uniprot ID   -
Organism   Enterovibrio sp. 27052020O     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3476969..3488495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8599_RS15650 (AB8599_15655) - 3477932..3478096 (+) 165 WP_407331776.1 hypothetical protein -
  AB8599_RS15655 (AB8599_15660) - 3478202..3478468 (+) 267 WP_407331777.1 YihD family protein -
  AB8599_RS15660 (AB8599_15665) ccoG 3478720..3480147 (+) 1428 WP_407331778.1 cytochrome c oxidase accessory protein CcoG -
  AB8599_RS15665 (AB8599_15670) - 3480274..3481260 (+) 987 WP_407331779.1 serine/threonine protein kinase -
  AB8599_RS15670 (AB8599_15675) - 3481297..3481899 (+) 603 WP_407331780.1 thiol:disulfide interchange protein DsbA/DsbL -
  AB8599_RS15675 (AB8599_15680) comM 3481969..3483495 (-) 1527 WP_407331781.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB8599_RS15680 (AB8599_15685) ilvG 3483955..3485601 (+) 1647 WP_407331782.1 acetolactate synthase 2 catalytic subunit -
  AB8599_RS15685 (AB8599_15690) ilvM 3485598..3485846 (+) 249 WP_407331783.1 acetolactate synthase 2 small subunit -
  AB8599_RS15690 (AB8599_15695) - 3485872..3486807 (+) 936 WP_407331784.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54873.93 Da        Isoelectric Point: 8.2749

>NTDB_id=1033652 AB8599_RS15675 WP_407331781.1 3481969..3483495(-) (comM) [Enterovibrio sp. 27052020O]
MNLAIIQSRACVGVGAPQVTVEVHISNGLPAFNLVGLAETTVKEARDRVRSAIVNSGFEFPARRITVNLAPADLPKDGGR
FDLPIALGVLAASGQIPMTALSKHEFVGELALSGQLRAVKGTLPAAVVCRESGRRLVVPDDNGGQVALVGRDIHLSAPDL
NAVCRHLSGQGSLMLKEPDDMETAPQDNYRCLQDIIGQQQGKRALEISAAGSHNLLFLGPPGTGKTMLASRMADLLPPMS
ESEALETAAITSLTERPLHEGNWRQRPFRAPHHSSSMAALVGGGTVPKPGEISLAHNGILFLDEMPEFERKVLDSLREPL
ESGEVMISRANSKTRFPSRFQLIGALNPSPTGHYEGQLARSNPQATLRYLNRLSGPFLDRFDLSIEIPALPRGTLTEGGD
RGEPTNVVKARIEKARDVMLSRAGKVNCLLSSREIETYCPLSKADADFLETALHRLGLSIRAYHRIIKVARTIADLSGDL
HIQRGHLAEALGYRSMDRLLKQLTSLAS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1033652 AB8599_RS15675 WP_407331781.1 3481969..3483495(-) (comM) [Enterovibrio sp. 27052020O]
ATGAATCTTGCCATTATTCAAAGCCGAGCGTGTGTCGGCGTCGGTGCACCCCAAGTGACAGTTGAAGTGCATATTAGTAA
CGGGCTTCCTGCCTTCAACTTGGTTGGTTTGGCTGAGACCACTGTCAAAGAAGCGCGAGATCGCGTTCGTAGTGCCATTG
TCAATTCGGGGTTTGAGTTCCCCGCGAGACGCATTACGGTGAACCTTGCGCCTGCCGACCTCCCCAAAGATGGCGGGAGA
TTTGATTTACCGATTGCGCTCGGCGTATTGGCGGCCTCTGGGCAGATCCCGATGACAGCGCTTTCTAAACATGAGTTTGT
TGGCGAGCTAGCGCTTTCCGGGCAACTACGTGCGGTAAAAGGCACTTTGCCTGCTGCCGTTGTTTGTCGGGAGTCAGGCA
GACGGTTAGTCGTTCCCGATGATAACGGTGGGCAGGTTGCCTTGGTGGGACGTGATATTCACTTATCTGCTCCGGACCTC
AATGCTGTGTGTCGCCATCTCAGTGGGCAAGGCAGCTTAATGCTCAAAGAGCCTGATGATATGGAAACGGCGCCTCAGGA
TAACTATCGCTGTCTGCAGGATATTATTGGTCAGCAACAAGGAAAGCGGGCGCTGGAGATATCTGCCGCAGGTTCCCACA
ATTTACTTTTCTTAGGTCCTCCAGGCACAGGGAAGACCATGCTGGCGTCGCGAATGGCGGATTTATTGCCGCCTATGAGT
GAGAGTGAAGCTCTGGAAACAGCAGCCATCACCTCACTGACCGAGCGCCCATTGCACGAAGGCAATTGGCGTCAGCGCCC
GTTTCGTGCTCCGCATCATTCAAGCTCAATGGCAGCATTGGTGGGCGGGGGAACGGTACCTAAGCCGGGTGAGATATCCT
TAGCGCACAACGGTATTCTATTTCTTGATGAGATGCCCGAGTTTGAGCGCAAAGTATTGGATTCATTGAGAGAGCCGTTG
GAATCTGGCGAAGTGATGATTTCTCGTGCGAACAGTAAAACTCGCTTCCCTTCTCGTTTTCAGTTGATTGGGGCGTTAAA
CCCAAGCCCAACGGGTCATTACGAAGGACAATTGGCGCGATCGAATCCGCAAGCCACGCTGCGCTATCTGAATCGTTTAT
CCGGTCCATTCTTGGATCGCTTTGATTTATCAATTGAAATTCCCGCGTTGCCTCGTGGTACGCTGACTGAAGGCGGTGAT
CGCGGTGAGCCCACTAACGTGGTGAAAGCACGGATCGAAAAAGCGCGAGATGTCATGCTATCGCGGGCGGGGAAAGTGAA
TTGCTTGCTATCAAGCCGTGAAATAGAAACCTATTGTCCGTTATCAAAAGCGGATGCAGATTTTCTTGAAACCGCTTTGC
ATCGGTTAGGTCTTTCTATTCGTGCTTATCATCGCATCATCAAAGTGGCGAGGACCATTGCTGATCTTTCTGGTGACCTA
CATATTCAACGCGGACACCTGGCCGAGGCGCTGGGCTATCGCTCAATGGATCGTTTGCTCAAGCAATTGACCTCTTTGGC
GAGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

73.425

100

0.734
  comM Vibrio cholerae strain A1552

72.495

100

0.726
  comM Haemophilus influenzae Rd KW20

61.493

100

0.616
  comM Glaesserella parasuis strain SC1401

60.672

99.606

0.604
  comM Legionella pneumophila str. Paris

47.6

98.425

0.469
  comM Legionella pneumophila strain ERS1305867

47.6

98.425

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.65

100

0.417

Multiple sequence alignment