Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8808_RS12430 Genome accession   NZ_CP166101
Coordinates   2973837..2975336 (+) Length   499 a.a.
NCBI ID   WP_369926067.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 2632     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2975466..2984807 2973837..2975336 flank 130


Gene organization within MGE regions


Location: 2973837..2984807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8808_RS12430 (AB8808_12425) comM 2973837..2975336 (+) 1500 WP_369926067.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB8808_RS12435 (AB8808_12430) - 2975466..2976131 (+) 666 WP_369926069.1 lysozyme inhibitor LprI family protein -
  AB8808_RS12440 (AB8808_12435) - 2976179..2977591 (+) 1413 WP_369926071.1 XVIPCD domain-containing protein -
  AB8808_RS12445 (AB8808_12440) - 2977836..2979623 (+) 1788 WP_369926074.1 cation:proton antiporter -
  AB8808_RS12450 (AB8808_12445) aceA 2979650..2980945 (-) 1296 WP_369926076.1 isocitrate lyase -
  AB8808_RS12455 (AB8808_12450) aceB 2980969..2982567 (-) 1599 WP_369926077.1 malate synthase A -
  AB8808_RS12460 (AB8808_12455) - 2982709..2983728 (+) 1020 WP_369926079.1 LysR family transcriptional regulator -
  AB8808_RS12465 (AB8808_12460) - 2983729..2984190 (-) 462 WP_369926081.1 hypothetical protein -
  AB8808_RS12470 (AB8808_12465) - 2984409..2984807 (+) 399 WP_369926083.1 hypothetical protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53666.50 Da        Isoelectric Point: 6.1952

>NTDB_id=1033419 AB8808_RS12430 WP_369926067.1 2973837..2975336(+) (comM) [Xanthomonas sp. NCPPB 2632]
MSLAVTLSRAQEGVTAPQVIVEVHLSGGLPSTSIVGLPEAAVREARDRVRVAIQNTDFEYPSRRVTVNLAPAELPKDGGR
FDLAIALGILAAGSQVPRERLDDCEFLGELALSGELRAVPGILPALIRARRSGRRIVVPLANAAEAALIGEGDVLLAGSL
AEVCAWLRGQAELVSPAAADFYDLPMCGPDMSDLRGQYQARRALEIAAAGGHHILLIGPPGTGKTMLAERLPGILPPMTE
SEALESCAIRSLSGEAIDPACWRRRPFRAPHHTASGVALVGGGSSPRPGEISLAHNGVLFLDELPEFSRQVLEVLREPLE
SGQIVISRAARQCTFPAEFQLVAAMNPCPCGYSGDPLHDCRCTPDQIQRYRGRISGPLMDRIDLCVEVPRVPIAEFAAMR
GPRDDDSATVRKRVINAREKALLRAGQANAELSVANLERDCALPSAEREWLQETLDTMGASARAYHRILRVARTIADMEG
GAGCVEQSHLAEALHYRRF

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1033419 AB8808_RS12430 WP_369926067.1 2973837..2975336(+) (comM) [Xanthomonas sp. NCPPB 2632]
ATGAGCCTCGCCGTCACTCTATCGCGCGCGCAGGAAGGCGTTACCGCGCCACAGGTCATCGTCGAGGTGCACCTCTCCGG
CGGACTGCCGTCCACCTCCATCGTCGGGCTCCCCGAGGCCGCCGTGCGGGAAGCGCGCGACCGCGTCCGCGTGGCCATCC
AGAACACCGATTTCGAATACCCCAGTCGCCGGGTCACCGTGAACCTCGCCCCCGCCGAACTGCCCAAGGACGGTGGACGC
TTCGACCTGGCCATCGCGCTGGGTATCCTCGCCGCGGGCTCGCAGGTGCCGCGGGAACGCCTGGACGACTGCGAGTTCCT
GGGTGAGTTGGCCCTGTCCGGCGAACTGCGGGCCGTGCCCGGCATCCTGCCCGCCCTGATTCGAGCGCGGCGCAGCGGCC
GTCGCATCGTGGTCCCGCTGGCCAACGCGGCCGAAGCCGCTCTCATCGGCGAAGGCGACGTGCTGCTGGCCGGCAGCCTG
GCCGAGGTCTGCGCCTGGTTGCGCGGTCAGGCGGAGCTGGTCAGTCCGGCCGCCGCGGATTTCTACGACCTGCCCATGTG
CGGCCCGGACATGAGCGACCTCCGCGGTCAATACCAGGCACGGCGGGCGCTGGAAATCGCCGCGGCTGGCGGACACCACA
TCCTGCTGATCGGTCCGCCGGGCACGGGCAAGACCATGCTGGCCGAACGGCTGCCGGGCATCCTGCCGCCCATGACCGAA
TCGGAGGCGCTGGAAAGCTGCGCTATCCGCTCGCTGTCCGGCGAGGCTATCGATCCCGCCTGCTGGCGCCGCCGGCCTTT
CCGGGCACCGCACCACACGGCATCGGGCGTCGCGCTAGTCGGCGGTGGCTCCAGTCCGCGGCCGGGCGAAATCTCGCTGG
CGCACAACGGCGTGCTGTTCCTGGACGAGCTGCCGGAATTCAGCCGGCAGGTGCTGGAGGTACTGCGCGAACCGCTCGAG
TCCGGGCAGATCGTGATCTCGCGTGCCGCCCGTCAGTGCACCTTTCCCGCCGAGTTCCAGCTCGTCGCCGCCATGAACCC
GTGTCCCTGTGGGTACTCCGGCGATCCCTTGCACGACTGCCGCTGCACGCCCGACCAGATCCAGCGCTACCGCGGGCGCA
TCTCCGGTCCGTTGATGGATCGCATCGACCTCTGCGTGGAAGTGCCCCGCGTGCCCATCGCCGAGTTCGCGGCCATGCGT
GGTCCACGAGACGACGACAGCGCCACGGTTCGCAAGCGGGTCATCAACGCGCGGGAGAAAGCGTTGCTGCGTGCGGGCCA
GGCCAACGCTGAACTAAGCGTAGCGAACCTGGAGCGCGACTGCGCCCTGCCATCGGCGGAGCGGGAATGGCTGCAGGAAA
CCCTGGACACGATGGGTGCGTCGGCGCGGGCGTATCACCGGATTCTGCGAGTGGCGCGGACCATTGCCGATATGGAGGGC
GGGGCGGGGTGTGTGGAGCAGTCGCACTTGGCCGAGGCGCTGCATTACCGGCGGTTTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.527

99.599

0.543
  comM Vibrio campbellii strain DS40M4

53.722

99.599

0.535
  comM Haemophilus influenzae Rd KW20

52.579

100

0.531
  comM Legionella pneumophila strain ERS1305867

52.087

100

0.525
  comM Legionella pneumophila str. Paris

52.087

100

0.525
  comM Glaesserella parasuis strain SC1401

51.292

100

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.287

100

0.433

Multiple sequence alignment