Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8809_RS03915 Genome accession   NZ_CP166097
Coordinates   870095..870625 (-) Length   176 a.a.
NCBI ID   WP_180778595.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain NCPPB 929     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 865095..875625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8809_RS03890 (AB8809_03890) - 865379..865810 (+) 432 WP_181847159.1 carboxymuconolactone decarboxylase family protein -
  AB8809_RS03895 (AB8809_03895) - 865897..866511 (+) 615 WP_015841653.1 hypothetical protein -
  AB8809_RS03900 (AB8809_03900) - 866572..867162 (-) 591 WP_181847157.1 hypothetical protein -
  AB8809_RS03905 (AB8809_03905) - 867348..867806 (-) 459 WP_180778593.1 GNAT family N-acetyltransferase -
  AB8809_RS03910 (AB8809_03910) - 868019..869845 (-) 1827 WP_349854530.1 amidohydrolase -
  AB8809_RS03915 (AB8809_03915) ssb 870095..870625 (-) 531 WP_180778595.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB8809_RS03920 (AB8809_03920) uvrA 870878..873712 (+) 2835 WP_180778596.1 excinuclease ABC subunit UvrA -
  AB8809_RS03925 (AB8809_03925) - 873729..874148 (+) 420 WP_015841647.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18799.79 Da        Isoelectric Point: 5.2456

>NTDB_id=1033372 AB8809_RS03915 WP_180778595.1 870095..870625(-) (ssb) [Pectobacterium aroidearum strain NCPPB 929]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQNSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1033372 AB8809_RS03915 WP_180778595.1 870095..870625(-) (ssb) [Pectobacterium aroidearum strain NCPPB 929]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACACTGGCAACTTCCGAATCCTGGCGTGATAAACAGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTGGTGCTGTTCGGCAAACTGGCTGAAGTCGCGGGCGAATATCTGCGCAAAGGCTCTCAAGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAAGGCGGTTGGGGAC
AACCTCAGCAACCACAGGGCGGCAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCAGCCCAAAACAGCGCTCCA
GCGCAAAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.773
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.608
  ssb Neisseria meningitidis MC58

46.893

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369

Multiple sequence alignment