Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8809_RS01005 Genome accession   NZ_CP166097
Coordinates   234192..235718 (-) Length   508 a.a.
NCBI ID   WP_349856681.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain NCPPB 929     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 229192..240718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8809_RS00980 (AB8809_00980) ytfR 229348..230868 (+) 1521 WP_349856683.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  AB8809_RS00985 (AB8809_00985) ytfT 230855..231865 (+) 1011 WP_349856682.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  AB8809_RS00990 (AB8809_00990) yjfF 231865..232827 (+) 963 WP_180779397.1 galactofuranose ABC transporter, permease protein YjfF -
  AB8809_RS00995 (AB8809_00995) hdfR 232849..233676 (-) 828 WP_015842127.1 HTH-type transcriptional regulator HdfR -
  AB8809_RS01000 (AB8809_01000) - 233797..234135 (+) 339 WP_014701822.1 DUF413 domain-containing protein -
  AB8809_RS01005 (AB8809_01005) comM 234192..235718 (-) 1527 WP_349856681.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB8809_RS01010 (AB8809_01010) ilvL 236126..236224 (+) 99 WP_071531109.1 ilv operon leader peptide -
  AB8809_RS01015 (AB8809_01015) ilvG 236365..238011 (+) 1647 WP_349856680.1 acetolactate synthase 2 catalytic subunit -
  AB8809_RS01020 (AB8809_01020) ilvM 238069..238329 (+) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  AB8809_RS01025 (AB8809_01025) - 238356..239282 (+) 927 WP_349856679.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55425.00 Da        Isoelectric Point: 6.6928

>NTDB_id=1033368 AB8809_RS01005 WP_349856681.1 234192..235718(-) (comM) [Pectobacterium aroidearum strain NCPPB 929]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLIRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRN
SIERKHIAEALSYRSMDRLLIQLHRSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1033368 AB8809_RS01005 WP_349856681.1 234192..235718(-) (comM) [Pectobacterium aroidearum strain NCPPB 929]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCTTAACGCTAGTTGGCTTACCAGAAACTACCGTTAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCGGCATCAGAACAAATCGATGGGGAAAAGCTAATCCGCTACGAGTTTCT
TGGCGAATTAGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAGTCAGGCC
GCCAGCTAATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAAGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGTTACTCAGTTGCTCCGATATCGCACTGGCTCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGAAAGACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCGCCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCACAGTTCTTCTATGGCCGCACTCGTGGGGGGAGGATCGTTGCCAAAACCCGGAGAAATCTCAC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGGACGCGCGCCAAAGTGTGCTACCCGGCACGCGTGCAGCTCGTCGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAGGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGAGAAAGCAGCGCAACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGCGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACGATCGCTGACCTCGGCGATCGGAAC
AGCATAGAGAGAAAGCATATTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.606

0.636
  comM Vibrio cholerae strain A1552

63.817

99.016

0.632
  comM Glaesserella parasuis strain SC1401

63.116

99.803

0.63
  comM Vibrio campbellii strain DS40M4

62.648

99.606

0.624
  comM Legionella pneumophila str. Paris

50.299

98.622

0.496
  comM Legionella pneumophila strain ERS1305867

50.299

98.622

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.337

99.803

0.472

Multiple sequence alignment