Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8814_RS20810 Genome accession   NZ_CP166090
Coordinates   4846600..4848120 (+) Length   506 a.a.
NCBI ID   WP_205392786.1    Uniprot ID   -
Organism   Xanthomonas hydrangeae strain NCPPB 4692     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4841600..4853120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8814_RS20790 (AB8814_20780) - 4842485..4843168 (+) 684 WP_205392784.1 RIO1 family regulatory kinase/ATPase -
  AB8814_RS20795 (AB8814_20785) - 4843383..4845356 (-) 1974 WP_205392785.1 beta-N-acetylglucosaminidase domain-containing protein -
  AB8814_RS20800 (AB8814_20790) - 4845779..4846153 (-) 375 WP_197970279.1 P-II family nitrogen regulator -
  AB8814_RS20805 (AB8814_20795) - 4846306..4846584 (+) 279 WP_184406361.1 accessory factor UbiK family protein -
  AB8814_RS20810 (AB8814_20800) comM 4846600..4848120 (+) 1521 WP_205392786.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB8814_RS20815 (AB8814_20805) - 4848210..4848719 (+) 510 WP_205392787.1 lipocalin family protein -
  AB8814_RS20820 (AB8814_20810) - 4849294..4849470 (-) 177 WP_205392788.1 hypothetical protein -
  AB8814_RS20825 (AB8814_20815) - 4849855..4851417 (+) 1563 WP_205392789.1 EAL domain-containing protein -
  AB8814_RS20830 (AB8814_20820) - 4851667..4852791 (-) 1125 WP_205392790.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53925.76 Da        Isoelectric Point: 8.3425

>NTDB_id=1033330 AB8814_RS20810 WP_205392786.1 4846600..4848120(+) (comM) [Xanthomonas hydrangeae strain NCPPB 4692]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQASRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGTQKAPAAELAVQALGVRALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLVRWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLIAAMNPCPCGWAGDSSGRCRCSSDTIGRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
VGEDSASMRTRVVAARARQLARAGVPNAQLDQAQTDHHCRLQNDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
VIATRHLTEAIGYRKLDRAVGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1033330 AB8814_RS20810 WP_205392786.1 4846600..4848120(+) (comM) [Xanthomonas hydrangeae strain NCPPB 4692]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCAGTGCGCGAATCGCGCGAACGCGTGCGTGCCGCGCTGC
TGTGCGCACAGTTCGAATTCCCGGCACGGCGCATCACCATCAATCTGGCGCCGGCCGATTTACCCAAGGAAGGCGGCCGT
TTCGACCTGCCCATCGCCCTCGGCATTCTGGCCGCCAGCGGTCAGATCGACCGGCAAGCCTTGGCCGAGTACGAATTTCT
CGGCGAACTCGCCCTGACCGGCGAGTTGCGCGGTGTCGATGGCGTGCTGCCCGCCGCCCTGGCAGCAGCGCAGGCCAGCC
GCCGCCTGATCGTGCCGCTGGCCAACGGTGCCGAAGCCGCCATCGCCGGCCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTGGAAGTCTGTGCCACGCTCAATGGCACCCAGAAGGCGCCCGCCGCCGAACTGGCGGTGCAAGCGCTCGGCGTACGCGC
CCTGCCCGACATGGCCGACGTGCGCGGCCAACCGCATGCCCGCCGCGCGCTGGAAATTGCCGCAGCCGGCGGTCACCATT
TATTGCTGGTCGGTAGCCCTGGCTGCGGCAAGACCTTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCGGAAGCCAGCGAA
GCCGAGGCGCTGGAAACCGCCGCCATTACCTCCATCAGCGGTCGCGGACTGGATCTTGTGCGCTGGCGGCAACGCCCCTA
TCGGGCTCCGCACCACACCGCCAGCGCGGTCGCCTTGGTTGGCGGCGGCACACATCCACGCCCCGGCGAGATCTCGCTGG
CCCACAACGGCGTGTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGCCAAACGCTGGAAGTGCTGCGCGAGCCGCTGGAA
TCGGGCCTGGTCACCATCTCGCGCGCCGCGCGCAGTGTGGATTTCCCGGCCAGGTTCCAACTGATCGCTGCGATGAATCC
CTGTCCGTGCGGGTGGGCCGGCGACAGCAGCGGGCGTTGCCGTTGCAGCAGCGACACCATCGGCCGTTATCGCAGCCGGA
TCTCCGGGCCGCTGCTGGATCGCATCGATCTGCATGTCGAGGTCCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGCAAC
GTCGGCGAGGACAGTGCCAGCATGCGCACGCGCGTGGTCGCGGCGCGCGCACGGCAACTTGCACGTGCCGGCGTGCCCAA
TGCACAACTGGACCAGGCACAAACCGATCATCACTGCCGCCTGCAGAATGACGATCAGCTGTTGCTGGAACGCGCCATCG
AACACCTGCAACTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTGGCCCGCACCATCGCCGATCTCGACGACAGCGCC
GTCATTGCAACGCGTCATCTGACCGAAGCGATCGGCTACCGCAAACTGGATCGCGCAGTGGGCACGGCAAGCGCAGCCTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.324

100

0.563
  comM Haemophilus influenzae Rd KW20

55.446

99.802

0.553
  comM Glaesserella parasuis strain SC1401

55.159

99.605

0.549
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

52.695

99.012

0.522
  comM Legionella pneumophila strain ERS1305867

52.695

99.012

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.462

Multiple sequence alignment