Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8W25_RS17065 Genome accession   NZ_CP166012
Coordinates   3650987..3652507 (+) Length   506 a.a.
NCBI ID   WP_369833834.1    Uniprot ID   -
Organism   Cronobacter dublinensis strain 2012-05-18     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3645987..3657507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8W25_RS17045 (AB8W25_17045) - 3647549..3648478 (-) 930 WP_007716995.1 branched-chain amino acid transaminase -
  AB8W25_RS17050 (AB8W25_17050) ilvM 3648499..3648756 (-) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  AB8W25_RS17055 (AB8W25_17055) ilvG 3648753..3650399 (-) 1647 WP_105640919.1 acetolactate synthase 2 catalytic subunit -
  AB8W25_RS17060 (AB8W25_17060) ilvL 3650538..3650636 (-) 99 WP_071601137.1 ilv operon leader peptide -
  AB8W25_RS17065 (AB8W25_17065) comM 3650987..3652507 (+) 1521 WP_369833834.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB8W25_RS17070 (AB8W25_17070) - 3652585..3652923 (-) 339 WP_007716988.1 DUF413 domain-containing protein -
  AB8W25_RS17075 (AB8W25_17075) hdfR 3653043..3653864 (+) 822 WP_105631939.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55048.30 Da        Isoelectric Point: 8.1293

>NTDB_id=1032990 AB8W25_RS17065 WP_369833834.1 3650987..3652507(+) (comM) [Cronobacter dublinensis strain 2012-05-18]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTLVGLPETTVKEARDRVRSALINSGYDFQAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLHASRLEEYEFVGELALTGALRGVPGAISAAMEALGCKRKIIVAHDNAPEVGLINKEGCLVAHHL
QEVCAFLEGKTTLGSAEPSAFHFKEPAGDLSEVIGQSQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQSAQAG
ENSSQVRERVIQSRDRQLARQGKLNAMLDNREIRQFCMLSAEDAQWLEAALLKLGLSVRAWQRLLKVARTIADSEQKERI
TREHLQEALSYRAIDRMLAHLQNLMS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1032990 AB8W25_RS17065 WP_369833834.1 3650987..3652507(+) (comM) [Cronobacter dublinensis strain 2012-05-18]
ATGTCGCTGTCCGTTATTCATACCCGCGCCGCGCTGGGCGTAAAAGCGCCGCTCGTCACTGTCGAAGTACATATCAGCGC
CGGGCTGCCAGGCCTGACATTGGTCGGACTGCCAGAAACGACGGTAAAGGAAGCCAGAGATCGTGTGCGCAGCGCGCTTA
TCAATAGTGGTTATGATTTCCAGGCCAAAAAAATCACTATAAATCTGGCGCCTGCCGATTTGCCGAAGGAAGGGGGACGA
TATGATTTGCCGATAGCGATAGCGCTCCTCGCGGCGTCTGAGCAATTGCATGCCTCACGTCTTGAAGAGTATGAGTTTGT
GGGGGAACTGGCACTCACAGGCGCGTTGAGAGGCGTCCCCGGTGCGATTTCAGCCGCCATGGAAGCGCTTGGCTGTAAAA
GGAAGATAATTGTCGCGCACGACAACGCGCCGGAAGTGGGATTGATTAATAAAGAAGGCTGCCTTGTCGCCCATCATCTG
CAGGAGGTGTGCGCCTTTCTGGAAGGGAAAACGACGCTGGGATCAGCCGAACCCTCGGCGTTTCATTTTAAGGAGCCTGC
GGGCGATCTTAGCGAGGTTATCGGCCAGTCACAGGGGAAACGCGCACTGGAATTAACGGCAGCTGGCGGCCATAACCTGT
TGTTTATTGGCCCCCCCGGTACAGGAAAAACGATGCTGGCCAGCAGACTCAACGGATTATTGCCGCCTCTGAGCGACCAG
GAAGCACTGGAGAGCGCGGCAATACTTAGCCTCGTCAATCCCGTCTCTTTACATCACCAATGGCGTCAGCGGCCTTTCAG
GGCCCCTCACCATAGCGCGTCGCTGAATGCAATGGTGGGCGGAGGTGCCATCCCAGCGCCTGGAGAAATCTCTCTCGCCC
ATAACGGCGTACTCTTCCTTGATGAACTGCCGGAATTTGAACGCCGCGTACTGGATGCATTACGTGAGCCTATTGAATCC
GGACAGATCCATCTTTCACGAACCCGAGCCAAGCTTACTTATCCAGCGCGCTTTCAGCTTATTGCTGCCATGAACCCCAG
CCCTACGGGGCACTATAAAGGGAACCATAACCGCTGCTCACCAGAACAGACGCTACGTTACCTGGGACGTCTTTCCGGGC
CTTTCCTCGACCGGTTTGATCTCTCGCTGGAAATTCCGTTGCCGCCGCCAGGTATGCTCAGTCAGTCAGCGCAGGCGGGC
GAAAACAGTTCGCAGGTCCGTGAGCGCGTCATTCAAAGCCGTGACAGACAGCTTGCACGGCAAGGGAAACTCAACGCGAT
GCTGGATAATCGGGAGATACGCCAGTTTTGTATGCTGAGCGCTGAAGATGCACAGTGGCTTGAAGCGGCACTACTCAAAC
TCGGGTTGTCGGTACGTGCCTGGCAGCGTTTACTGAAGGTGGCGCGAACTATCGCGGATAGCGAACAGAAAGAGAGGATT
ACTCGGGAACATTTGCAGGAAGCGCTAAGCTATCGCGCGATAGACAGGATGCTCGCGCATTTGCAAAACCTGATGTCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.707

100

0.611
  comM Glaesserella parasuis strain SC1401

59.961

100

0.601
  comM Vibrio cholerae strain A1552

59.841

99.407

0.595
  comM Vibrio campbellii strain DS40M4

59.96

99.209

0.595
  comM Legionella pneumophila str. Paris

47.887

98.221

0.47
  comM Legionella pneumophila strain ERS1305867

47.887

98.221

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.418

100

0.437

Multiple sequence alignment