Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8W26_RS03360 Genome accession   NZ_CP166005
Coordinates   716489..718009 (+) Length   506 a.a.
NCBI ID   WP_032980959.1    Uniprot ID   -
Organism   Cronobacter malonaticus strain 2008-02-01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 711489..723009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8W26_RS03340 (AB8W26_03350) - 713049..713978 (-) 930 WP_004387276.1 branched-chain amino acid transaminase -
  AB8W26_RS03345 (AB8W26_03355) ilvM 713999..714256 (-) 258 WP_007766319.1 acetolactate synthase 2 small subunit -
  AB8W26_RS03350 (AB8W26_03360) ilvG 714253..715899 (-) 1647 WP_032980960.1 acetolactate synthase 2 catalytic subunit -
  AB8W26_RS03355 (AB8W26_03365) ilvL 716038..716136 (-) 99 WP_071601137.1 ilv operon leader peptide -
  AB8W26_RS03360 (AB8W26_03370) comM 716489..718009 (+) 1521 WP_032980959.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB8W26_RS03365 (AB8W26_03375) - 718089..718427 (-) 339 WP_004387280.1 DUF413 domain-containing protein -
  AB8W26_RS03370 (AB8W26_03380) hdfR 718535..719368 (+) 834 WP_155362283.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54859.21 Da        Isoelectric Point: 7.5578

>NTDB_id=1032915 AB8W26_RS03360 WP_032980959.1 716489..718009(+) (comM) [Cronobacter malonaticus strain 2008-02-01]
MSLSVIHTRAALGVKAPLVTVEVHISTGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAHHL
QEVCAFLEGKTQLECAEPSDFEFKEPAGDLSEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLATRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDISLEIPLPPPGMLSQVGQSG
ESSAQVRKRVMESRECQFARQGKLNAMLDNGEIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQSQRV
GRKHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1032915 AB8W26_RS03360 WP_032980959.1 716489..718009(+) (comM) [Cronobacter malonaticus strain 2008-02-01]
ATGTCGTTATCTGTTATCCATACTCGTGCTGCGCTTGGAGTAAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCAC
CGGGCTGCCCGGCCTGACAATCGTCGGCCTGCCAGAAACTACCGTTAAAGAGGCAAGAGATCGTGTACGCAGCGCGCTCA
TTAATAGCGGTTATGAGTTCCCGGCTAAAAAGATAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAGGGTGGACGA
TATGATTTACCTATCGCCATCGCGCTTCTGGCCGCGTCTGAGCAATTAAGCGCATCTCATCTCGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACCGGCGCGCTGAGAGGCGTTCCCGGTGCAATTTCAGCCGCCATTGAGGCTCTGGGATGTAAAA
GAAAAATTATCGTTGCACATGATAATGGCCCTGAGGTGGGACTCATCAATAAAGAAGGTTGCCTTGTGGCTCATCATTTA
CAGGAGGTCTGCGCCTTTCTGGAAGGGAAAACGCAGCTCGAATGCGCCGAACCATCTGACTTTGAATTCAAAGAGCCTGC
CGGAGACCTGAGTGAGGTCATCGGGCAACCTCAGGGGAAACGCGCACTGGAGTTAACCGCAGCGGGCGGGCATAACCTGC
TTTTTATTGGGCCTCCCGGTACAGGTAAAACGATGCTTGCCACCAGACTCAATGGGTTACTACCCCCTCTGAGCGACCAG
GAAGCCCTTGAGAGCGCTGCGATACTAAGCCTGGTTAACCCCGTCTCTTTGCACCATCAATGGCGTCAGCGTCCATTCAG
AGCCCCTCACCATAGCGCGTCGCTGAATGCCATGGTGGGTGGAGGAGCCATTCCAGCACCTGGAGAAATCTCACTTGCCC
ATAATGGCGTGCTTTTTCTGGATGAGTTACCTGAATTCGAGCGTCGCGTGTTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAGATTCATCTTTCACGCACCCGGGCAAAACTAACGTATCCGGCACGCTTTCAACTTATTGCTGCTATGAATCCCAG
CCCAACAGGACACTACAAAGGAAACCATAACCGCTGCTCGCCAGAGCAGACGCTGCGTTATCTCGGTCGGCTTTCCGGGC
CATTCCTTGACAGGTTTGATATCTCGCTTGAAATTCCGCTGCCTCCGCCGGGTATGCTTAGTCAGGTGGGACAGTCTGGC
GAAAGCAGCGCGCAAGTGAGGAAACGTGTAATGGAAAGCAGAGAATGTCAGTTTGCTCGGCAGGGCAAGCTTAACGCCAT
GCTGGACAATGGGGAGATACGTCAGTTTTGTGTGCTTAGCCCGGAGGACGCGCAGTGGCTGGAGGCAGCGCTAATCAAAC
TGGGACTGTCGGTTCGCGCATGGCAGCGCTTACTCAAAGTGGCGCGTACTATCGCTGATTGTGAACAGAGTCAAAGGGTT
GGCCGTAAACATCTGCAGGAGGCACTGAGCTATCGTGCGATAGACAGGATGCTGGCGCATTTGCAAAACATGATGGCATA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.707

100

0.611
  comM Glaesserella parasuis strain SC1401

59.763

100

0.599
  comM Vibrio campbellii strain DS40M4

59.96

99.209

0.595
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Legionella pneumophila str. Paris

48.185

98.024

0.472
  comM Legionella pneumophila strain ERS1305867

48.185

98.024

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

100

0.441

Multiple sequence alignment