Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8W30_RS00790 Genome accession   NZ_CP166000
Coordinates   159517..161037 (+) Length   506 a.a.
NCBI ID   WP_041460627.1    Uniprot ID   -
Organism   Cronobacter sakazakii strain ATCC 29004     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 154517..166037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8W30_RS00770 (AB8W30_00765) - 156078..157007 (-) 930 WP_004387276.1 branched-chain amino acid transaminase -
  AB8W30_RS00775 (AB8W30_00770) ilvM 157028..157285 (-) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  AB8W30_RS00780 (AB8W30_00775) ilvG 157282..158928 (-) 1647 WP_012126062.1 acetolactate synthase 2 catalytic subunit -
  AB8W30_RS00785 (AB8W30_00780) ilvL 159067..159165 (-) 99 WP_071601137.1 ilv operon leader peptide -
  AB8W30_RS00790 (AB8W30_00785) comM 159517..161037 (+) 1521 WP_041460627.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB8W30_RS00795 (AB8W30_00790) - 161116..161454 (-) 339 WP_004387280.1 DUF413 domain-containing protein -
  AB8W30_RS00800 (AB8W30_00795) hdfR 161562..162395 (+) 834 WP_012126064.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54884.27 Da        Isoelectric Point: 7.5451

>NTDB_id=1032872 AB8W30_RS00790 WP_041460627.1 159517..161037(+) (comM) [Cronobacter sakazakii strain ATCC 29004]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAPDNGPEVGLINKEGCLVAYHL
QEVCAFLEGKTQLECAEPSGFEFREPAGDLGEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRERVIVSRERQLARQGKLNAMLDNREIRQFCVISPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQWI
GREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1032872 AB8W30_RS00790 WP_041460627.1 159517..161037(+) (comM) [Cronobacter sakazakii strain ATCC 29004]
ATGTCGTTATCAGTTATTCATACCCGCGCTGCGCTTGGGGTTAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCGC
CGGGCTGCCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGATAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGCGA
TATGATCTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATCGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCCTGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTTGTGGCTTATCATCTA
CAGGAGGTCTGCGCCTTCCTGGAAGGAAAAACACAGCTGGAATGCGCTGAGCCATCCGGCTTTGAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAGGTTATCGGTCAACCACAGGGAAAGCGCGCGCTTGAGTTAACCGCAGCGGGTGGACATAACCTGC
TTTTTATTGGGCCTCCTGGTACAGGTAAAACCATGCTTGCCAGTAGGCTCAATGGTTTACTGCCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCTGCTATACTCAGCCTGGTCAACCCCGTCTCTTTACACCATCAATGGCGTCAGCGTCCATTCAG
GGCCCCTCACCATAGCGCATCGCTTAACGCCATGGTGGGCGGAGGAGCAATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAATGGCGTGCTTTTTCTGGATGAGTTACCTGAGTTTGAACGTCGCGTACTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATCTTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCAAG
TCCGACAGGGCACTACAAAGGCAATCACAATCGCTGCTCACCGGAGCAAACGCTGCGCTATCTTGGGCGGCTTTCCGGGC
CATTTCTTGACAGGTTTGATCTCTCCCTTGAAATCCCGCTTCCCCCGCCAGGTATGCTTAGCCAGGCAGGACAGACCGGT
GAAAGCAGCGCGCAAGTAAGGGAACGAGTCATTGTTAGCAGAGAACGTCAGCTTGCACGTCAGGGAAAACTCAATGCCAT
GCTGGATAACCGGGAAATACGTCAGTTTTGTGTGATTAGTCCGGAGGACGCGCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTGGCACGCACGATTGCAGATTGTGAACAGAAACAATGGATT
GGTCGTGAGCATCTTCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCGCATTTACAAAACATGATGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.297

100

0.617
  comM Vibrio cholerae strain A1552

60.359

99.209

0.599
  comM Glaesserella parasuis strain SC1401

59.566

100

0.597
  comM Vibrio campbellii strain DS40M4

59.96

99.209

0.595
  comM Legionella pneumophila str. Paris

47.106

99.012

0.466
  comM Legionella pneumophila strain ERS1305867

47.106

99.012

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.615

100

0.439

Multiple sequence alignment