Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8W27_RS19765 Genome accession   NZ_CP165997
Coordinates   4144517..4146037 (+) Length   506 a.a.
NCBI ID   WP_012814870.1    Uniprot ID   -
Organism   Cronobacter turicensis strain LMG23827     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4139517..4151037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8W27_RS19745 (AB8W27_19765) - 4141078..4142007 (-) 930 WP_007766320.1 branched-chain amino acid transaminase -
  AB8W27_RS19750 (AB8W27_19770) ilvM 4142028..4142285 (-) 258 WP_012814873.1 acetolactate synthase 2 small subunit -
  AB8W27_RS19755 (AB8W27_19775) ilvG 4142282..4143928 (-) 1647 WP_012814872.1 acetolactate synthase 2 catalytic subunit -
  AB8W27_RS19760 (AB8W27_19780) ilvL 4144067..4144165 (-) 99 WP_071601137.1 ilv operon leader peptide -
  AB8W27_RS19765 (AB8W27_19785) comM 4144517..4146037 (+) 1521 WP_012814870.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB8W27_RS19770 (AB8W27_19790) - 4146118..4146456 (-) 339 WP_012814869.1 DUF413 domain-containing protein -
  AB8W27_RS19775 (AB8W27_19795) hdfR 4146564..4147397 (+) 834 WP_282914022.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54968.31 Da        Isoelectric Point: 7.6414

>NTDB_id=1032868 AB8W27_RS19765 WP_012814870.1 4144517..4146037(+) (comM) [Cronobacter turicensis strain LMG23827]
MSLSIIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHVGEYEFVGELALTGALRGVPGAISAAMEALGCQRKIIVAHDNAPEVGLINKEGCLVAHHL
QEVCAFLEGKTTLEPATPSGFEFREPAGDLNEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GRIHLSRTRAKLTYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLGRLSGPFLDRFDISLEIPLPPPGMLSQAGQPG
ESSSHVRERVIQSRERQFVRQGKLNAMLDNKEIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADSEQKEKI
GREHLMEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1032868 AB8W27_RS19765 WP_012814870.1 4144517..4146037(+) (comM) [Cronobacter turicensis strain LMG23827]
ATGTCGCTATCAATTATTCATACCCGAGCGGCGCTTGGCGTTAAAGCGCCGTTGGTGACAGTCGAGGTACATATCAGCGC
AGGGCTGCCCGGCCTGACGATTGTTGGCCTGCCGGAAACCACGGTTAAAGAAGCCCGGGACCGGGTACGTAGCGCGCTTA
TCAACAGTGGTTATGATTTCCCGGCTAAAAAGATCACTATCAACCTCGCTCCGGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTGCCGATTGCGATAGCGCTTCTCGCTGCTTCAGAGCAACTGAGCGCATCGCATGTTGGTGAGTATGAATTTGT
AGGAGAGCTCGCGCTCACAGGCGCACTGAGAGGCGTACCCGGTGCAATTTCAGCTGCTATGGAGGCGCTTGGGTGCCAAA
GGAAAATTATCGTCGCGCATGATAATGCACCCGAAGTCGGGCTCATTAACAAGGAGGGCTGTCTTGTCGCTCATCATCTA
CAGGAGGTGTGCGCTTTTCTGGAAGGGAAAACCACGCTGGAACCAGCCACGCCTTCCGGCTTTGAATTCAGAGAGCCTGC
GGGAGACCTGAACGAAGTGATCGGGCAACCGCAAGGGAAACGCGCGCTGGAGTTGACGGCAGCAGGTGGGCATAACCTGC
TGTTTATTGGGCCACCCGGCACCGGTAAAACGATGCTCGCAAGCAGACTCAATGGGTTACTACCGCCTCTGAGCGACCAG
GAGGCACTGGAGAGCGCTGCAATACTTAGTCTGGTCAATCCCGTCTCCTTGCATCATCAGTGGCGTCAGCGGCCATTCAG
AGCCCCTCACCATAGCGCCTCGCTGAATGCCATGGTGGGTGGAGGAGCGATACCTGCGCCTGGAGAGATTTCACTCGCGC
ATAACGGCGTACTTTTTCTGGATGAATTACCTGAATTTGAGCGGCGCGTGCTGGATGCATTACGCGAGCCCATCGAATCC
GGGCGAATTCATCTTTCACGGACGCGGGCGAAACTGACCTATCCGGCACGCTTTCAGCTTATCGCCGCTATGAATCCCAG
CCCGACAGGACACTACCAGGGTAACCATAACCGCTGCACGCCGGAGCAAACGCTACGTTATCTTGGCCGGCTTTCAGGTC
CTTTTCTCGACAGGTTTGATATCTCGCTCGAAATTCCTCTTCCTCCGCCAGGTATGCTTAGTCAGGCGGGACAGCCAGGC
GAAAGCAGTTCACACGTGCGGGAGCGAGTGATTCAAAGCCGCGAACGTCAGTTTGTACGGCAGGGGAAGCTCAATGCCAT
GCTGGATAACAAGGAGATACGCCAGTTCTGTGTACTTAGCCCGGAAGATGCGCAGTGGCTGGAAGCCGCGTTAATTAAAC
TGGGACTATCTGTTCGCGCCTGGCAGCGTTTACTTAAAGTGGCGCGCACTATTGCTGATAGTGAGCAGAAAGAAAAAATT
GGTCGTGAACATCTGATGGAAGCGCTGAGTTACCGCGCAATAGACAGGATGCTGGCGCATTTGCAGAACATGATGGCATA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.904

100

0.613
  comM Glaesserella parasuis strain SC1401

59.763

100

0.599
  comM Vibrio campbellii strain DS40M4

59.761

99.209

0.593
  comM Vibrio cholerae strain A1552

59.642

99.407

0.593
  comM Legionella pneumophila str. Paris

47.61

99.209

0.472
  comM Legionella pneumophila strain ERS1305867

47.61

99.209

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.135

99.407

0.439

Multiple sequence alignment