Detailed information NTG1032863

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: DYY98_RS03360
• Genome accession: NZ_LT992436
• Coordinates: 680387..681391 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005764.1
• Uniprot ID: -
• Organism: Staphylococcus aureus isolate 1549-REV
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 675387..686391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DYY98_RS03345	yajC	677919..678179 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
DYY98_RS03350	tgt	678198..679337 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
DYY98_RS03355	queA	679360..680385 (-)	1026	WP_031928192.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
DYY98_RS03360	ruvB	680387..681391 (-)	1005	WP_001005764.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
DYY98_RS03365	ruvA	681423..682025 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
DYY98_RS03370	-	682039..682494 (-)	456	WP_000368902.1	ACT domain-containing protein	-
DYY98_RS03375	obgE	682507..683799 (-)	1293	WP_000496098.1	GTPase ObgE	-
DYY98_RS03380	rpmA	684156..684440 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
DYY98_RS03385	-	684452..684772 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
DYY98_RS03390	rplU	684778..685086 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
DYY98_RS03395	mreD	685322..685852 (-)	531	WP_001259927.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37703.98 Da
• Isoelectric Point: 5.0832

>NTDB_id=1032863 DYY98_RS03360 WP_001005764.1 680387..681391(-) (ruvB) [Staphylococcus aureus isolate 1549-REV]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=1032863 DYY98_RS03360 WP_001005764.1 680387..681391(-) (ruvB) [Staphylococcus aureus isolate 1549-REV]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTGGGCACAGGTATTGATGATGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTTGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGGCCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515