Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DYY98_RS03365 Genome accession   NZ_LT992436
Coordinates   681423..682025 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus isolate 1549-REV     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 676423..687025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY98_RS03345 yajC 677919..678179 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  DYY98_RS03350 tgt 678198..679337 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  DYY98_RS03355 queA 679360..680385 (-) 1026 WP_031928192.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DYY98_RS03360 ruvB 680387..681391 (-) 1005 WP_001005764.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  DYY98_RS03365 ruvA 681423..682025 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  DYY98_RS03370 - 682039..682494 (-) 456 WP_000368902.1 ACT domain-containing protein -
  DYY98_RS03375 obgE 682507..683799 (-) 1293 WP_000496098.1 GTPase ObgE -
  DYY98_RS03380 rpmA 684156..684440 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  DYY98_RS03385 - 684452..684772 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  DYY98_RS03390 rplU 684778..685086 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  DYY98_RS03395 mreD 685322..685852 (-) 531 WP_001259927.1 rod shape-determining protein MreD -
  DYY98_RS03400 mreC 685852..686694 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  DYY98_RS03405 - 686893..687012 (-) 120 WP_000840600.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=1032864 DYY98_RS03365 WP_000271547.1 681423..682025(-) (ruvA) [Staphylococcus aureus isolate 1549-REV]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1032864 DYY98_RS03365 WP_000271547.1 681423..682025(-) (ruvA) [Staphylococcus aureus isolate 1549-REV]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425