Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8E32_RS12135 Genome accession   NZ_CP165966
Coordinates   2621479..2622990 (-) Length   503 a.a.
NCBI ID   WP_100188284.1    Uniprot ID   -
Organism   Marinomonas polaris strain jeju2-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2616479..2627990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E32_RS12115 (AB8E32_12115) - 2617264..2617557 (-) 294 WP_369919562.1 putative quinol monooxygenase -
  AB8E32_RS12120 (AB8E32_12120) - 2617701..2618039 (+) 339 WP_369919563.1 cytochrome c5 family protein -
  AB8E32_RS12125 (AB8E32_12125) rep 2618052..2620100 (-) 2049 WP_072840631.1 DNA helicase Rep -
  AB8E32_RS12130 (AB8E32_12130) - 2620258..2621187 (-) 930 WP_100188283.1 bile acid:sodium symporter family protein -
  AB8E32_RS12135 (AB8E32_12135) comM 2621479..2622990 (-) 1512 WP_100188284.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB8E32_RS12140 (AB8E32_12140) - 2623098..2623319 (+) 222 WP_369919564.1 TIGR02450 family Trp-rich protein -
  AB8E32_RS12145 (AB8E32_12145) - 2623414..2623653 (-) 240 WP_012071321.1 accessory factor UbiK family protein -
  AB8E32_RS12150 (AB8E32_12150) glnK 2624146..2624484 (+) 339 WP_012071322.1 P-II family nitrogen regulator -
  AB8E32_RS12155 (AB8E32_12155) - 2624524..2625789 (+) 1266 WP_100188286.1 ammonium transporter -
  AB8E32_RS12160 (AB8E32_12160) - 2625966..2627495 (+) 1530 WP_369919565.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54585.59 Da        Isoelectric Point: 7.3587

>NTDB_id=1032663 AB8E32_RS12135 WP_100188284.1 2621479..2622990(-) (comM) [Marinomonas polaris strain jeju2-2]
MSLATIYSRARVGVSSPLVTVETHISNGLPSLNIVGLPEAAVREAKDRVRSAIINSHFEFPTRRVTINLAPADLPKEGGR
YDLAIAISVLVASGQLGELNLRDTEFIGELALSGDIRGVPGLLPSAIACHHANRQLILPEDNQQEAALVEGDAVFAKHLT
QVTAHLLKLSKLPVCESKPSEPLPLDHKDMRDVKGQYQARRALEVAAAGGHNLLFIGPAGTGKTMLASRLPSIMPAMTEA
EALAVASVQSVAGRKMGLDWYWSERPFRSPHHSCSAAALVGGGSIPKPGEASLAHCGVLFLDELPEFDRKVLEVLREPLE
SGEVHISRARGQVTFPARFQLVAAMNASNEAYSGGQDYYQSSASQKYLKKLSAPFLDRIDLHVEVPPLPSDVLVNAQEEG
ECSAYVRERVELAVARQRARQGVQNALLSGRQLEAICALSEEDKQFMQQALEKLKLSARAYHRVLKVALTLADLNNSPVT
RAHLMESLSYRKMEKTLSMAVSS

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=1032663 AB8E32_RS12135 WP_100188284.1 2621479..2622990(-) (comM) [Marinomonas polaris strain jeju2-2]
ATGAGTTTAGCCACTATTTATAGTCGTGCCCGTGTGGGTGTGTCTTCCCCTTTAGTTACCGTCGAAACCCATATTTCAAA
TGGATTGCCTTCCCTAAATATAGTGGGCTTGCCTGAAGCCGCTGTTCGAGAAGCGAAAGATCGAGTACGCAGTGCAATTA
TCAACAGCCATTTTGAATTTCCTACCCGACGCGTCACCATCAATTTAGCACCAGCGGATTTACCCAAAGAGGGTGGCCGA
TACGATTTGGCGATTGCTATCAGTGTGTTAGTCGCGTCTGGGCAACTCGGAGAGTTGAATCTTCGTGACACTGAGTTTAT
AGGGGAGTTGGCTTTGTCGGGGGATATTCGTGGTGTGCCAGGGTTGCTGCCGTCTGCTATTGCTTGTCACCATGCTAATC
GCCAACTGATTCTTCCCGAAGACAATCAGCAAGAAGCTGCTTTAGTTGAAGGCGACGCAGTGTTTGCCAAACATCTTACT
CAAGTGACAGCCCATCTACTAAAATTAAGTAAGTTACCTGTTTGTGAATCTAAACCGTCTGAGCCTTTGCCTTTGGATCA
TAAAGACATGCGCGATGTAAAAGGTCAATATCAGGCTCGTAGAGCGCTAGAAGTCGCAGCAGCGGGAGGACATAATCTAT
TGTTTATTGGACCAGCAGGAACAGGGAAAACCATGTTGGCGTCACGTTTACCAAGTATTATGCCCGCCATGACAGAAGCA
GAAGCGCTGGCTGTAGCGTCTGTTCAATCGGTGGCTGGACGAAAAATGGGGCTAGACTGGTATTGGTCCGAACGTCCGTT
TCGATCTCCGCACCACTCTTGTTCAGCTGCTGCATTGGTTGGAGGCGGTTCAATACCTAAGCCAGGTGAGGCATCTTTGG
CGCATTGTGGAGTGCTCTTTCTTGATGAATTGCCAGAATTTGACCGTAAGGTGTTAGAAGTGCTGCGCGAGCCCTTAGAA
AGTGGTGAGGTACATATTTCACGTGCACGTGGACAAGTTACCTTTCCTGCTCGCTTCCAATTGGTTGCAGCAATGAACGC
CAGTAATGAAGCCTACAGTGGTGGACAAGATTATTATCAATCCAGCGCTAGCCAAAAATACCTCAAAAAACTCTCTGCAC
CCTTTTTAGATCGCATTGATTTGCATGTAGAAGTGCCGCCTTTGCCTTCTGATGTTTTAGTGAATGCACAAGAAGAAGGA
GAGTGCAGTGCTTATGTTCGTGAGCGCGTGGAGCTTGCGGTCGCAAGGCAGAGAGCTCGACAAGGAGTACAAAATGCTTT
GCTAAGCGGTCGACAGTTAGAGGCTATTTGTGCATTAAGTGAAGAAGATAAACAATTTATGCAGCAAGCACTGGAAAAGT
TAAAACTCTCAGCTCGTGCTTACCATCGAGTCTTAAAAGTTGCGCTCACCTTGGCAGATTTAAACAATTCTCCAGTAACC
AGGGCGCATTTAATGGAATCATTAAGTTATCGAAAAATGGAAAAAACCTTATCGATGGCGGTATCTTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.8

99.404

0.535
  comM Vibrio campbellii strain DS40M4

53.2

99.404

0.529
  comM Glaesserella parasuis strain SC1401

52.381

100

0.525
  comM Haemophilus influenzae Rd KW20

52.183

100

0.523
  comM Legionella pneumophila str. Paris

47.896

99.205

0.475
  comM Legionella pneumophila strain ERS1305867

47.896

99.205

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.023

100

0.441

Multiple sequence alignment