Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FY484_RS09585 Genome accession   NZ_LT906614
Coordinates   2066476..2066787 (-) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae O1 biovar El Tor str. N16961     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2061476..2071787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY484_RS09560 lapB 2061670..2062839 (-) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -
  FY484_RS09565 - 2062851..2063132 (-) 282 WP_000691492.1 LapA family protein -
  FY484_RS09570 ihfB 2063271..2063549 (-) 279 WP_000167341.1 integration host factor subunit beta -
  FY484_RS09575 rpsA 2063837..2065507 (-) 1671 WP_000140318.1 30S ribosomal protein S1 -
  FY484_RS09580 cmk 2065616..2066293 (-) 678 WP_000094752.1 (d)CMP kinase -
  FY484_RS09585 comEA 2066476..2066787 (-) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  FY484_RS09590 ppiD 2066922..2068781 (-) 1860 WP_000969331.1 peptidylprolyl isomerase -
  FY484_RS09595 - 2068934..2069206 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  FY484_RS09600 lon 2069390..2071750 (-) 2361 WP_001047611.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=1032124 FY484_RS09585 WP_001166105.1 2066476..2066787(-) (comEA) [Vibrio cholerae O1 biovar El Tor str. N16961]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1032124 FY484_RS09585 WP_001166105.1 2066476..2066787(-) (comEA) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437