Detailed information NTG1030851

Bioinformatically predicted

Overview

• Name: comA
• Type: Regulator
• Locus tag: AB6W34_RS05875
• Genome accession: NZ_CP165607
• Coordinates: 1195376..1197568 (+)
• Length: 730 a.a.
• NCBI ID: WP_119182947.1
• Uniprot ID: -
• Organism: Lacticaseibacillus paracasei strain MYA5
• Function: processing and transport of ComC (predicted from homology) Competence regulation

Genomic Context

Location: 1190376..1202568

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB6W34_RS05840 (AB6W34_05835)	-	1190484..1190657 (+)	174	WP_003591780.1	ComC/BlpC family leader-containing pheromone/bacteriocin	-
AB6W34_RS05845 (AB6W34_05840)	-	1190696..1190869 (+)	174	WP_003591768.1	bacteriocin	-
AB6W34_RS05850 (AB6W34_05845)	-	1191129..1191368 (-)	240	WP_003588828.1	hypothetical protein	-
AB6W34_RS05855 (AB6W34_05850)	-	1191915..1192112 (+)	198	WP_369526645.1	hypothetical protein	-
AB6W34_RS05860 (AB6W34_05855)	-	1192474..1193280 (-)	807	WP_003567351.1	LytTR family DNA-binding domain-containing protein	-
AB6W34_RS05865 (AB6W34_05860)	-	1193285..1194583 (-)	1299	WP_369526646.1	GHKL domain-containing protein	-
AB6W34_RS05870 (AB6W34_05865)	-	1194773..1194910 (+)	138	WP_003571414.1	bacteriocin-like peptide, LSEI_2386 family	-
AB6W34_RS05875 (AB6W34_05870)	comA	1195376..1197568 (+)	2193	WP_119182947.1	peptide cleavage/export ABC transporter	Regulator
AB6W34_RS05880 (AB6W34_05875)	-	1197579..1198958 (+)	1380	WP_003591764.1	bacteriocin secretion accessory protein	-
AB6W34_RS05885 (AB6W34_05880)	-	1199132..1199482 (+)	351	WP_003567340.1	hypothetical protein	-
AB6W34_RS05890 (AB6W34_05885)	-	1199555..1199866 (+)	312	WP_003580849.1	hypothetical protein	-
AB6W34_RS05895 (AB6W34_05890)	-	1200172..1201527 (+)	1356	WP_003567335.1	threonine/serine exporter ThrE family protein	-
AB6W34_RS05900 (AB6W34_05895)	-	1201629..1201925 (+)	297	WP_119182946.1	bacteriocin immunity protein	-
AB6W34_RS05905 (AB6W34_05900)	-	1202119..1202403 (+)	285	WP_003580845.1	bacteriocin immunity protein	-

Sequence

Protein

• Length: 730 a.a.
• Molecular weight: 81342.56 Da
• Isoelectric Point: 7.0227

>NTDB_id=1030851 AB6W34_RS05875 WP_119182947.1 1195376..1197568(+) (comA) [Lacticaseibacillus paracasei strain MYA5]
MIKYNLKLGQTQYYKRYYTPQVDERDCGVAALNMLLQFNGSDYSLAHLRQLAKTDQEGTTALGIVRAAQALHFETKAVKA
DMTLFDLDDVPYPFLVHVLKRGELLHYYVVFKATKDHILIGDPDPSVAMTWLPKERFAKEWSGVAIFIAPEPQYQPRKED
KGSLFAFVPILARQKGIIANIIVAAVLITLISIVGSYFLQSIIDTYIPNGMRTTLGMIASGLILAYVLQSVLTYGQNFLM
AVLGQRLSIDVILGYVRHLYELPMSFFSTRRTGEIVSRFSDANKIIDALANTIMTLFLDIWIVLILGIVLGIQNTTLFLV
SLIAVPCYLVIVFAFQRPFNRLNQETMESNAILSSSIIEDLNGIETIKSLTGEKVSYERVDREFVTYLKKSFNYTKADQL
QQAIKGLLKLVLNVVVLWIGASLVMANKMSLGQMLTFNALLAYFTNPLESIINLQPKLQMAKVANNRLNEVYLVESEFKE
QRSLNDRHLIDGAINVTDVSFKYGFGQDVLKQINLEIPENAKYTIVGMSGSGKSTLAKLLVGFYPVDTGKGKITFNGVPI
SDVDLTTLRQYIEYVPQDPFIFSGSVIENLTLGSRSNITEADIEAACSVAEIAGDISNLPQIWQTKLSESGSILSGGQKQ
RLAIARALLSPAKVLIFDESTSSLDTITERKIVDRLLAMTDRTIIFVAHRLTIAAKTEQIVVMDHGAIVEQGNHTELLAK
QGYYARLVSE

Nucleotide

• Length: 2193 bp

>NTDB_id=1030851 AB6W34_RS05875 WP_119182947.1 1195376..1197568(+) (comA) [Lacticaseibacillus paracasei strain MYA5]
ATGATCAAATACAACCTAAAGCTTGGCCAAACACAGTATTACAAGCGTTACTACACGCCTCAGGTGGATGAGCGCGATTG
CGGGGTTGCGGCGCTTAATATGCTGCTGCAATTTAATGGCTCGGATTATTCGCTAGCGCATCTGCGACAGTTGGCGAAGA
CGGATCAGGAAGGAACAACAGCGTTAGGGATTGTCCGCGCTGCTCAGGCGCTTCATTTTGAAACCAAGGCTGTCAAGGCG
GATATGACGCTGTTTGATCTTGATGATGTTCCTTATCCGTTTCTTGTCCATGTTTTGAAGCGTGGCGAGTTGCTTCATTA
TTATGTCGTGTTTAAGGCGACAAAGGATCATATCTTGATTGGCGATCCTGATCCATCAGTAGCGATGACCTGGCTTCCCA
AAGAGCGCTTTGCGAAGGAGTGGTCGGGGGTCGCTATTTTTATTGCGCCAGAACCGCAATATCAACCACGCAAAGAGGAC
AAAGGCAGTCTTTTTGCGTTTGTGCCGATACTAGCGCGACAAAAAGGAATCATTGCCAATATTATTGTCGCCGCTGTGTT
GATCACGTTGATTAGTATTGTCGGGTCTTATTTTCTTCAGTCGATTATTGATACTTATATTCCAAACGGGATGCGCACAA
CTTTGGGAATGATTGCCAGTGGCCTCATCCTCGCTTATGTCCTGCAGTCGGTTTTAACCTATGGGCAAAATTTTTTGATG
GCTGTTTTAGGACAGCGTTTGTCGATTGATGTCATTTTGGGTTACGTTAGGCATCTTTATGAATTACCGATGTCCTTCTT
TTCCACGCGTCGGACTGGGGAAATTGTGTCGCGGTTTTCCGATGCTAATAAGATTATTGATGCGCTGGCAAACACAATTA
TGACCTTGTTTCTTGATATTTGGATTGTCTTAATTTTAGGGATCGTGTTAGGCATTCAAAACACCACCTTATTCTTGGTG
TCTTTAATTGCTGTGCCTTGTTATTTGGTGATTGTGTTCGCTTTTCAGCGGCCATTTAATCGACTGAATCAAGAGACGAT
GGAAAGCAATGCCATTTTGAGTTCATCTATTATCGAGGACTTGAACGGGATTGAGACGATTAAATCACTGACCGGTGAGA
AAGTCAGTTATGAACGGGTTGACCGTGAATTCGTCACGTATTTGAAAAAGTCGTTCAATTATACAAAAGCTGATCAACTG
CAGCAGGCGATCAAGGGACTGCTGAAGTTGGTTTTGAATGTGGTCGTGCTGTGGATTGGTGCGAGTTTGGTGATGGCTAA
CAAGATGAGTCTAGGACAGATGCTGACGTTCAATGCGTTGTTGGCATATTTCACTAATCCGTTAGAAAGCATCATTAATT
TGCAACCAAAATTGCAAATGGCCAAAGTCGCGAATAACCGGCTGAATGAAGTGTATTTGGTTGAATCGGAGTTTAAAGAA
CAGCGAAGTTTGAATGATCGGCATTTAATTGATGGCGCCATCAATGTGACCGATGTGTCCTTTAAGTATGGTTTTGGGCA
AGATGTTTTGAAACAAATCAACCTTGAAATCCCGGAGAATGCCAAATACACCATTGTCGGCATGAGCGGATCAGGAAAAT
CGACCTTAGCCAAGTTGCTAGTAGGTTTCTATCCAGTGGACACTGGCAAAGGGAAAATCACATTTAATGGTGTTCCCATC
AGTGATGTTGATCTGACAACGTTACGACAATATATCGAGTATGTACCACAAGATCCGTTTATTTTTTCTGGCTCAGTCAT
TGAAAACTTAACGTTGGGTAGCCGTTCGAATATCACTGAAGCCGATATTGAAGCTGCCTGTTCAGTGGCGGAAATTGCCG
GAGATATTTCGAATTTGCCGCAGATATGGCAGACCAAACTTTCTGAAAGCGGCAGTATTTTATCGGGTGGACAAAAGCAG
CGCCTAGCAATTGCCCGCGCGTTATTATCACCGGCAAAAGTGTTGATTTTTGATGAATCGACCAGCAGTTTAGATACGAT
CACCGAGCGAAAAATTGTTGATCGGTTGTTAGCGATGACTGATCGAACCATTATTTTTGTGGCTCATCGGCTCACTATTG
CTGCTAAAACGGAACAGATTGTGGTCATGGACCATGGTGCGATTGTTGAACAAGGAAATCATACTGAGTTATTGGCCAAA
CAAGGCTATTATGCTCGGTTGGTAAGTGAGTGA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (510-662)

• Peptidase C39 family (Peptidase_C39) (16-152)

• ABC transporter transmembrane region (ABC_membrane) (180-448)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Streptococcus mitis NCTC 12261	58.914	98.356	0.579
comA	Streptococcus pneumoniae Rx1	58.357	98.356	0.574
comA	Streptococcus pneumoniae D39	58.357	98.356	0.574
comA	Streptococcus pneumoniae R6	58.357	98.356	0.574
comA	Streptococcus mitis SK321	58.217	98.356	0.573
comA	Streptococcus pneumoniae TIGR4	57.939	98.356	0.57
comA	Streptococcus gordonii str. Challis substr. CH1	57.103	98.356	0.562
comA/nlmT	Streptococcus mutans UA159	54.986	98.904	0.544