Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACH48_RS21075 Genome accession   NZ_AP027942
Coordinates   4585557..4587071 (+) Length   504 a.a.
NCBI ID   WP_017787027.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain VA84     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4580557..4592071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH48_RS21060 (VAWG005_40600) - 4582321..4583265 (-) 945 WP_182956213.1 branched-chain amino acid transaminase -
  AACH48_RS21065 (VAWG005_40610) ilvM 4583278..4583529 (-) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  AACH48_RS21070 (VAWG005_40620) ilvG 4583526..4585172 (-) 1647 WP_019840322.1 acetolactate synthase 2 catalytic subunit -
  AACH48_RS21075 (VAWG005_40630) comM 4585557..4587071 (+) 1515 WP_017787027.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACH48_RS21080 (VAWG005_40640) - 4587187..4588101 (+) 915 WP_005306819.1 acyltransferase -
  AACH48_RS21085 (VAWG005_40650) - 4588095..4589048 (+) 954 WP_019840320.1 acetyltransferase -
  AACH48_RS21090 (VAWG005_40660) - 4588994..4589479 (-) 486 WP_005306827.1 DUF523 domain-containing protein -
  AACH48_RS21095 (VAWG005_40670) - 4589580..4590230 (-) 651 WP_005306829.1 DNA mismatch repair protein MutT -
  AACH48_RS21100 (VAWG005_40680) - 4590306..4590941 (+) 636 WP_024942648.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54603.50 Da        Isoelectric Point: 7.2854

>NTDB_id=103068 AACH48_RS21075 WP_017787027.1 4585557..4587071(+) (comM) [Aeromonas dhakensis strain VA84]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSGQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHAAI
EREHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=103068 AACH48_RS21075 WP_017787027.1 4585557..4587071(+) (comM) [Aeromonas dhakensis strain VA84]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATAGCGGCCCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGACTACCGGAAACCTCGGTGAAGGAGTCGCGGGACCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAGCACATCACGGTCAATCTGGCTCCCGCCGATCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATCCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAATTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCCTGCCGGGACGCGGGAC
GCACCCTGCTGGTACCACGGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAGGTACGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAATACGAGCTGCCGCTGCCGGATCCCCAAACCACGGAGGCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATTGGCCAATCCCAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCTCGGGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGCGCCTCGGCCGTGGCGCTGGTGGGGGGTGGCAGCCACCCGCGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCTCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTCGATTTCCCCGCTCGCTTCCAGCTGGTCGGCGCTATGAACCCCAG
CCCCTGCGGCCACTACGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCGGTCAGATCCGCGAGCGGGTACTGGGCGCACGGGAGCGCATGCTGAGCCGTAACGGCAAACTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCCGCTTATCGCCGCAGGATGCCGAGTTTCTTGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGACACGCCGCCATC
GAAAGAGAGCACCTGATCGAGGCGCTCGGCTATCGGGCCATGGATCGGCTGCTGTCACGGCTGCGCAGCGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Vibrio campbellii strain DS40M4

62.55

99.603

0.623
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466

Multiple sequence alignment