Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   AB6M97_RS04550 Genome accession   NZ_CP163514
Coordinates   955253..955963 (+) Length   236 a.a.
NCBI ID   WP_369351137.1    Uniprot ID   -
Organism   Streptococcus hillyeri strain S23-3001-1     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 950253..960963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M97_RS04540 (AB6M97_04540) - 950943..952676 (+) 1734 WP_121834406.1 ABC transporter ATP-binding protein -
  AB6M97_RS04545 (AB6M97_04545) - 952678..954426 (+) 1749 WP_369351136.1 ABC transporter ATP-binding protein -
  AB6M97_RS04550 (AB6M97_04550) vicR 955253..955963 (+) 711 WP_369351137.1 response regulator YycF Regulator
  AB6M97_RS04555 (AB6M97_04555) vicK 955956..957326 (+) 1371 WP_121834410.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AB6M97_RS04560 (AB6M97_04560) vicX 957307..958110 (+) 804 WP_245962669.1 MBL fold metallo-hydrolase Regulator
  AB6M97_RS04565 (AB6M97_04565) xseA 958381..959709 (+) 1329 WP_121834411.1 exodeoxyribonuclease VII large subunit -
  AB6M97_RS04570 (AB6M97_04570) - 959702..960181 (+) 480 WP_183121631.1 GNAT family N-acetyltransferase -
  AB6M97_RS04575 (AB6M97_04575) - 960329..960547 (+) 219 WP_121834413.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27071.06 Da        Isoelectric Point: 4.8288

>NTDB_id=1030346 AB6M97_RS04550 WP_369351137.1 955253..955963(+) (vicR) [Streptococcus hillyeri strain S23-3001-1]
MKKILIVDDEKPISDIIKFNLSKEGYEVVTAFDGREALAQFAAEDPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIELALADENASEKSSLLKIGELEILPDAYVAHKRGQELE
LTHREFELLFHLATHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDIPSRPEYILTRRGVGYYMKAYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1030346 AB6M97_RS04550 WP_369351137.1 955253..955963(+) (vicR) [Streptococcus hillyeri strain S23-3001-1]
ATGAAAAAAATTCTTATTGTTGATGATGAAAAACCAATTTCAGACATCATTAAATTTAATTTATCGAAGGAAGGCTATGA
AGTCGTTACGGCTTTCGATGGACGAGAAGCCCTTGCGCAATTTGCAGCGGAGGATCCTGACTTAATTATTTTGGATTTGA
TGTTGCCAGAGCTAGATGGACTTGAAGTTGCCAAAGAAGTGCGTAAAACAAGTCATATTCCTATTATCATGCTTTCTGCA
AAAGATAGCGAGTTTGACAAGGTCATTGGATTGGAAATTGGTGCAGATGATTATGTGACCAAGCCCTTTTCAAATCGTGA
ATTGTTAGCACGTGTGAAAGCTCACTTGCGTCGTACAGAAAACATTGAACTTGCTCTTGCTGATGAAAATGCTTCGGAAA
AATCGAGTCTTTTGAAAATTGGTGAGCTAGAAATTTTACCAGATGCTTATGTGGCACATAAGCGTGGTCAAGAACTGGAG
TTGACTCACCGGGAGTTCGAATTATTATTCCACTTGGCGACTCATATTGGGCAAGTGATGACGCGTGAACATCTCCTAGA
GACAGTTTGGGGCTACGATTACTTTGGAGATGTGCGTACTGTTGACGTAACCGTGCGACGTCTGCGTGAAAAAATTGAGG
ATATTCCTAGTCGTCCAGAGTACATCTTAACCCGCCGTGGTGTTGGCTATTATATGAAAGCATATGACTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

86.441

100

0.864
  micA Streptococcus pneumoniae Cp1015

79.828

98.729

0.788
  covR Streptococcus salivarius strain HSISS4

46.781

98.729

0.462
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.259

98.305

0.445
  scnR Streptococcus mutans UA159

37.553

100

0.377

Multiple sequence alignment