Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   BUC38_RS00410 Genome accession   NZ_LT671674
Coordinates   77587..78177 (+) Length   196 a.a.
NCBI ID   WP_024406764.1    Uniprot ID   -
Organism   Streptococcus suis strain LS9N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 72587..83177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS00390 - 72830..74353 (+) 1524 WP_044689738.1 quinol oxidase -
  BUC38_RS00395 hexB 74471..76408 (+) 1938 WP_044689739.1 DNA mismatch repair endonuclease MutL Machinery gene
  BUC38_RS00400 - 76482..76847 (+) 366 WP_052503050.1 helix-turn-helix transcriptional regulator -
  BUC38_RS00405 - 76862..77509 (+) 648 WP_044672699.1 type II CAAX endopeptidase family protein -
  BUC38_RS00410 ruvA 77587..78177 (+) 591 WP_024406764.1 Holliday junction branch migration protein RuvA Machinery gene
  BUC38_RS00415 - 78336..78905 (+) 570 WP_044689741.1 DNA-3-methyladenine glycosylase I -
  BUC38_RS00420 cinA 78942..80123 (+) 1182 WP_044689742.1 competence/damage-inducible protein A Machinery gene
  BUC38_RS00425 recA 80175..81326 (+) 1152 WP_004195473.1 recombinase RecA Machinery gene
  BUC38_RS00430 spx 81485..81883 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  BUC38_RS00435 - 81990..82256 (+) 267 WP_004195477.1 IreB family regulatory phosphoprotein -
  BUC38_RS00440 ruvX 82256..82675 (+) 420 WP_044689743.1 Holliday junction resolvase RuvX -
  BUC38_RS00445 - 82687..83004 (+) 318 WP_004195480.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21734.09 Da        Isoelectric Point: 5.3292

>NTDB_id=1030331 BUC38_RS00410 WP_024406764.1 77587..78177(+) (ruvA) [Streptococcus suis strain LS9N]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFDGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1030331 BUC38_RS00410 WP_024406764.1 77587..78177(+) (ruvA) [Streptococcus suis strain LS9N]
ATGTACGACTATATTAAAGGAATTTTAACGAAAATAACTGCAAAATATATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACGGTCTATACGCATCAAGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTCGAAGAAGCCATGGAAGCCATGGAA
GCCCTTGGTTACCGTCCAGCCGAACTCAAGAAAATCAAGAAATTCTTCGACGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403

Multiple sequence alignment