Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB6N02_RS04175 Genome accession   NZ_CP163510
Coordinates   835806..837323 (-) Length   505 a.a.
NCBI ID   WP_052815775.1    Uniprot ID   A0A2L0TRT9
Organism   Aeromonas caviae strain 103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 830806..842323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N02_RS04150 (AB6N02_04150) - 831942..832577 (-) 636 WP_113977654.1 nicotinamidase -
  AB6N02_RS04155 (AB6N02_04155) - 832652..833302 (+) 651 WP_029314880.1 DNA mismatch repair protein MutT -
  AB6N02_RS04160 (AB6N02_04160) - 833379..833864 (+) 486 WP_069652406.1 DUF523 domain-containing protein -
  AB6N02_RS04165 (AB6N02_04165) - 833810..834766 (-) 957 WP_201956605.1 acyltransferase -
  AB6N02_RS04170 (AB6N02_04170) - 834774..835673 (-) 900 WP_369325413.1 acyltransferase -
  AB6N02_RS04175 (AB6N02_04175) comM 835806..837323 (-) 1518 WP_052815775.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB6N02_RS04180 (AB6N02_04180) ilvG 837708..839354 (+) 1647 WP_201921217.1 acetolactate synthase 2 catalytic subunit -
  AB6N02_RS04185 (AB6N02_04185) ilvM 839351..839608 (+) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  AB6N02_RS04190 (AB6N02_04190) - 839621..840565 (+) 945 WP_369325414.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54674.58 Da        Isoelectric Point: 7.4701

>NTDB_id=1030218 AB6N02_RS04175 WP_052815775.1 835806..837323(-) (comM) [Aeromonas caviae strain 103]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHATI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=1030218 AB6N02_RS04175 WP_052815775.1 835806..837323(-) (comM) [Aeromonas caviae strain 103]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACTGTGGAAGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACGGTCAACCTGGCCCCTGCGGATCTGCCCAAGGAGGGGGGCCGT
TTCGACCTGGCCATCGCCATCGGCATTCTCGCAGCATCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCGGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCTGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGACCCTGCCCGACGT
GCCGGATCTGCAGGACGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGT
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATTCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTACTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGGCACATCACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAACTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGATCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCTAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAACAACCT
GCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAGGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGACACGCCACTATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGACAGGCTGTTGTCACGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0TRT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.944

99.406

0.636
  comM Haemophilus influenzae Rd KW20

61.858

100

0.62
  comM Vibrio campbellii strain DS40M4

62.151

99.406

0.618
  comM Glaesserella parasuis strain SC1401

60.827

100

0.612
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.463

Multiple sequence alignment