Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACH36_RS00705 Genome accession   NZ_AP027939
Coordinates   153300..154814 (-) Length   504 a.a.
NCBI ID   WP_201892796.1    Uniprot ID   -
Organism   Aeromonas enteropelogenes strain VA111     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 148300..159814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH36_RS00680 (VAWG006_01240) - 149532..150167 (-) 636 WP_338611584.1 nicotinamidase -
  AACH36_RS00685 (VAWG006_01250) - 150242..150892 (+) 651 WP_338611585.1 DNA mismatch repair protein MutT -
  AACH36_RS00690 (VAWG006_01260) - 150889..151365 (+) 477 WP_338611586.1 DUF523 domain-containing protein -
  AACH36_RS00695 (VAWG006_01270) - 151320..152276 (-) 957 WP_338611587.1 acyltransferase -
  AACH36_RS00700 (VAWG006_01280) - 152283..153182 (-) 900 WP_225633608.1 acyltransferase -
  AACH36_RS00705 (VAWG006_01290) comM 153300..154814 (-) 1515 WP_201892796.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACH36_RS00710 (VAWG006_01300) ilvG 155200..156846 (+) 1647 WP_338611588.1 acetolactate synthase 2 catalytic subunit -
  AACH36_RS00715 (VAWG006_01310) ilvM 156843..157094 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  AACH36_RS00720 (VAWG006_01320) - 157107..158051 (+) 945 WP_010635712.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54589.47 Da        Isoelectric Point: 7.2854

>NTDB_id=102986 AACH36_RS00705 WP_201892796.1 153300..154814(-) (comM) [Aeromonas enteropelogenes strain VA111]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSGQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHAAI
EREHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=102986 AACH36_RS00705 WP_201892796.1 153300..154814(-) (comM) [Aeromonas enteropelogenes strain VA111]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTAGGTGTCGCGGCACCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGACTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTAGCCATCGCCATCGGTATTCTCGCCGCTTCCAAACAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGCTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGACGCGGGAC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAGGTACGCACCGCCCATCAGTTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAATACGAGCTGCCGCTGCCGGATCCCCAGACCACGGAGGCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAATCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCTGGTCACTGGCACCACAGGCCCTATCG
CACGCCGCACCACAGCGCCTCGGCAGTGGCGCTGGTGGGGGGTGGCAGCCACCCGCGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCTTGCGGCCACTACGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCGGTCAGATCCGCGAGCGGGTATTGGGCGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCCGCTTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATCCAGAAAC
TCGGGCTCAGCATCCGGGCCTGGCACCGTATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCGCCATC
GAAAGAGAGCACCTGATCGAGGCGCTCGGCTATCGGGCCATGGATCGGCTGCTCTCCAGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.603

0.635
  comM Vibrio campbellii strain DS40M4

62.749

99.603

0.625
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.64

100

0.468

Multiple sequence alignment