Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACH65_RS20335 Genome accession   NZ_AP027937
Coordinates   4389892..4391406 (+) Length   504 a.a.
NCBI ID   WP_338710635.1    Uniprot ID   -
Organism   Aeromonas veronii strain VA60     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4384892..4396406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH65_RS20320 (VAWG004_40020) - 4386629..4387573 (-) 945 WP_088870379.1 branched-chain amino acid transaminase -
  AACH65_RS20325 (VAWG004_40030) ilvM 4387586..4387864 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  AACH65_RS20330 (VAWG004_40040) ilvG 4387861..4389507 (-) 1647 WP_338710634.1 acetolactate synthase 2 catalytic subunit -
  AACH65_RS20335 (VAWG004_40050) comM 4389892..4391406 (+) 1515 WP_338710635.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACH65_RS20340 - 4391533..4392432 (+) 900 Protein_3926 acyltransferase -
  AACH65_RS20345 (VAWG004_40080) - 4392439..4393404 (+) 966 WP_201913383.1 acyltransferase -
  AACH65_RS20350 (VAWG004_40090) - 4393329..4393835 (-) 507 WP_265776078.1 DUF523 domain-containing protein -
  AACH65_RS20355 (VAWG004_40100) - 4393832..4394482 (-) 651 WP_088870385.1 DNA mismatch repair protein MutT -
  AACH65_RS20360 (VAWG004_40110) - 4394557..4395192 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54580.46 Da        Isoelectric Point: 7.4493

>NTDB_id=102982 AACH65_RS20335 WP_338710635.1 4389892..4391406(+) (comM) [Aeromonas veronii strain VA60]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESNQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=102982 AACH65_RS20335 WP_338710635.1 4389892..4391406(+) (comM) [Aeromonas veronii strain VA60]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGAGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGC
TTCGATCTGGCTATCGCTATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACAGGCGAAATTCGTCCCGTACTCGGGGTACTGCCTGCCGTACTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTGCCGCGGGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATACGAGCTGCCGCTACCAGACCCCCAAAGCGCGGAGAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATCTTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCGCGCGCTGGCCACTGGCACCACAGACCCTATCG
CACACCCCACCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTTTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGGCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGTGCCATGAATCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTTGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAATCAGCAGATCCGCGATCGAGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGCAACGGTAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCGGCGCAAGATGCCGAATTTTTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGACAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCACTCGGTTACAGGGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Haemophilus influenzae Rd KW20

61.462

100

0.617
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.462

Multiple sequence alignment