Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB5B06_RS15510 Genome accession   NZ_CP163419
Coordinates   2332102..2332662 (+) Length   186 a.a.
NCBI ID   WP_174425613.1    Uniprot ID   -
Organism   Cupriavidus basilensis strain BL-MT-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2327102..2337662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5B06_RS15500 uvrA 2327415..2330279 (-) 2865 WP_416047541.1 excinuclease ABC subunit UvrA -
  AB5B06_RS15505 - 2330663..2331922 (+) 1260 WP_416047542.1 MFS transporter -
  AB5B06_RS15510 ssb 2332102..2332662 (+) 561 WP_174425613.1 single-stranded DNA-binding protein Machinery gene
  AB5B06_RS15515 acpA 2332801..2334954 (-) 2154 WP_416047543.1 acid phosphatase -
  AB5B06_RS15520 - 2335185..2336531 (+) 1347 WP_416047544.1 cytochrome-c peroxidase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19165.98 Da        Isoelectric Point: 5.9566

>NTDB_id=1029604 AB5B06_RS15510 WP_174425613.1 2332102..2332662(+) (ssb) [Cupriavidus basilensis strain BL-MT-10]
MASINKVILVGNLGADPETRYLPSGDAVSNIRLATTDRYKDKTSGEMKEATEWHRIAFFGKLAEIAGQYLRKGSQVYIEG
RIRTRKWTDQSGAEKYSTEIVAEQMQMLGSRQGMGGGGGGGGDDMGGGGGGYGGGRESSGGGGGYGGGARSGGGQAAGGQ
QGAGGARRQQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1029604 AB5B06_RS15510 WP_174425613.1 2332102..2332662(+) (ssb) [Cupriavidus basilensis strain BL-MT-10]
ATGGCATCGATCAACAAAGTCATCCTCGTCGGCAACCTGGGCGCGGATCCGGAAACCCGCTACCTGCCCAGCGGCGACGC
CGTGAGCAACATCCGCCTGGCGACCACCGATCGTTACAAGGACAAGACCAGCGGCGAGATGAAGGAAGCCACCGAGTGGC
ACCGCATCGCCTTCTTTGGCAAGCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATATCGAAGGG
CGCATCCGCACCCGCAAGTGGACCGACCAGTCTGGCGCGGAAAAGTACAGCACCGAAATCGTGGCTGAGCAAATGCAGAT
GCTGGGTTCGCGCCAGGGCATGGGCGGTGGTGGCGGCGGCGGTGGCGACGACATGGGTGGTGGCGGCGGTGGCTATGGTG
GTGGCCGCGAATCGTCGGGCGGTGGCGGTGGTTACGGCGGCGGTGCGCGCAGCGGTGGCGGCCAGGCTGCCGGCGGCCAG
CAAGGTGCTGGCGGCGCGCGTCGCCAGCAGCAGGCTCCGTCGAACGGCTTTGAAGACATGGACGACGATATTCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.958

100

0.505
  ssb Glaesserella parasuis strain SC1401

46.809

100

0.473
  ssb Neisseria gonorrhoeae MS11

44.324

99.462

0.441
  ssb Neisseria meningitidis MC58

43.784

99.462

0.435

Multiple sequence alignment