Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB4670_RS17540 Genome accession   NZ_CP163382
Coordinates   3674837..3676324 (+) Length   495 a.a.
NCBI ID   WP_373658489.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Y03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3669837..3681324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4670_RS17515 (AB4670_17505) ribD 3670753..3671838 (-) 1086 WP_065719014.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AB4670_RS17520 (AB4670_17510) nrdR 3671854..3672312 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  AB4670_RS17525 (AB4670_17515) - 3672471..3673868 (-) 1398 WP_000738520.1 ammonium transporter -
  AB4670_RS17530 (AB4670_17520) glnK 3673926..3674264 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  AB4670_RS17535 (AB4670_17525) - 3674544..3674771 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  AB4670_RS17540 (AB4670_17530) comM 3674837..3676324 (+) 1488 WP_373658489.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB4670_RS17545 (AB4670_17535) - 3676339..3677772 (-) 1434 WP_373658491.1 PLP-dependent aminotransferase family protein -
  AB4670_RS17550 (AB4670_17540) - 3677884..3678660 (+) 777 WP_000845034.1 aldolase -
  AB4670_RS17555 (AB4670_17545) - 3678676..3679554 (+) 879 WP_373658494.1 dihydrodipicolinate synthase family protein -
  AB4670_RS17560 (AB4670_17550) - 3679597..3680418 (-) 822 WP_000975215.1 TorF family putative porin -
  AB4670_RS17565 (AB4670_17555) - 3680475..3680645 (-) 171 WP_171519573.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54499.40 Da        Isoelectric Point: 7.2753

>NTDB_id=1029493 AB4670_RS17540 WP_373658489.1 3674837..3676324(+) (comM) [Acinetobacter baumannii strain Y03]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYSVNHL
KEVCEHFLGIQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1029493 AB4670_RS17540 WP_373658489.1 3674837..3676324(+) (comM) [Acinetobacter baumannii strain Y03]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTCCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATTCGGTTAACCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCATACAAAAGCTAGCTCATGCGCAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGAGGACACTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAATCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Vibrio campbellii strain DS40M4

48.687

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.707

100

0.473

Multiple sequence alignment