Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABUK12_RS17920 Genome accession   NZ_CP163303
Coordinates   3991222..3992745 (-) Length   507 a.a.
NCBI ID   WP_410013113.1    Uniprot ID   -
Organism   Sodalis sp. C49 strain Strides     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3986222..3997745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUK12_RS17895 (ABUK12_17895) ytfR 3986298..3987800 (+) 1503 WP_410016698.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  ABUK12_RS17900 (ABUK12_17900) ytfT 3987815..3988831 (+) 1017 WP_410013109.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  ABUK12_RS17905 (ABUK12_17905) yjfF 3988824..3989885 (+) 1062 WP_410013110.1 galactofuranose ABC transporter, permease protein YjfF -
  ABUK12_RS17910 (ABUK12_17910) hdfR 3989918..3990736 (-) 819 WP_410013111.1 HTH-type transcriptional regulator HdfR -
  ABUK12_RS17915 (ABUK12_17915) - 3990857..3991195 (+) 339 WP_410013112.1 DUF413 domain-containing protein -
  ABUK12_RS17920 (ABUK12_17920) comM 3991222..3992745 (-) 1524 WP_410013113.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABUK12_RS17925 (ABUK12_17925) ilvL 3993128..3993229 (+) 102 WP_162367070.1 ilv operon leader peptide -
  ABUK12_RS17930 (ABUK12_17930) ilvG 3993386..3995032 (+) 1647 WP_410013114.1 acetolactate synthase 2 catalytic subunit -
  ABUK12_RS17935 (ABUK12_17935) ilvM 3995029..3995286 (+) 258 WP_410013115.1 acetolactate synthase 2 small subunit -
  ABUK12_RS17940 (ABUK12_17940) ilvE 3995308..3996237 (+) 930 WP_410013116.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54455.59 Da        Isoelectric Point: 8.6732

>NTDB_id=1029383 ABUK12_RS17920 WP_410013113.1 3991222..3992745(-) (comM) [Sodalis sp. C49 strain Strides]
MSLALIYTRASIGVQAPLISVEAHISKGLPGFTLVGLPDATIKGARDRVRSALLNNGFDFPARRITVSLAPADLPKEGGR
YDLPIALAILAASEQIAADKLACHEFLGELALSGELRPVQGAIPAALAAQQAGRRLILSSHNSGEAALIPDSRVLVAGHL
RDVCAFLQGGAELNAVPGQDPTPPAYDGADLSDITGQPQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLPGLMPPLSD
AEAVETAALFSLMSAGAARRHWRQRPFRAPHHSASMAALVGGGSLPRPGEISLAHNGVLFLDELPEFQRRVLDALREPLE
AGEIVISRAQAKVQYPARFQLVGAMNPSPSGDYQGVHGRSGLAQTLRYLNRLSGPFLDRFDLSIEVPLLPPGMLRRQNPA
GETSAMVRARVQAARDIQLRRGRKINAYLNNQEVALHCRLAEEDAIFLEEVMETLGLSVRAWHRTLKVARTLADLAGAAE
IQRDHLAEAVSYRTIDRLLQQLWRHME

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1029383 ABUK12_RS17920 WP_410013113.1 3991222..3992745(-) (comM) [Sodalis sp. C49 strain Strides]
ATGTCCCTTGCGTTAATTTATACCCGGGCGTCGATCGGCGTCCAGGCGCCGTTGATTTCAGTGGAGGCCCATATCAGCAA
AGGTCTGCCCGGCTTTACCCTGGTGGGGTTGCCTGACGCGACGATAAAAGGGGCGCGCGATCGGGTACGCAGCGCGCTGC
TGAACAACGGTTTCGATTTTCCCGCCCGGCGGATAACCGTCAGCCTGGCGCCGGCCGATCTGCCCAAGGAAGGCGGGCGC
TATGATTTGCCTATTGCGCTGGCGATCCTGGCCGCGTCGGAACAAATTGCCGCCGATAAGCTCGCTTGCCATGAATTTCT
CGGCGAACTGGCGCTGTCCGGCGAACTGCGGCCGGTGCAGGGCGCCATTCCGGCGGCGCTGGCGGCACAACAGGCCGGGC
GGCGTCTGATCCTGTCCAGCCATAACAGCGGCGAGGCGGCCCTGATACCGGATAGCCGCGTGCTGGTCGCCGGGCATCTG
CGCGATGTATGCGCCTTCCTGCAGGGCGGCGCCGAACTCAATGCCGTGCCGGGCCAGGACCCGACGCCGCCGGCATACGA
CGGCGCCGATCTCAGCGACATCACCGGCCAGCCGCAGGCCAAACGCGCCCTGGAAATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTTATCGGTCCGCCGGGCACCGGCAAGACCATGCTGGCCAGCCGGCTGCCGGGGTTGATGCCCCCCTTAAGCGAT
GCGGAGGCCGTAGAGACCGCCGCGCTGTTCAGTCTGATGAGCGCCGGGGCCGCCCGCCGGCATTGGCGCCAAAGACCGTT
TCGCGCCCCGCATCACAGCGCCTCGATGGCGGCCCTGGTCGGCGGCGGTTCCCTACCCCGGCCCGGCGAGATATCCCTGG
CCCATAACGGGGTGTTATTCCTGGATGAGCTGCCGGAGTTCCAGCGCCGGGTGCTGGACGCGCTGCGCGAGCCGCTGGAA
GCGGGCGAAATCGTTATCTCCCGCGCCCAGGCCAAGGTACAATACCCGGCGCGTTTCCAACTGGTGGGCGCCATGAACCC
CAGTCCGTCCGGCGATTACCAGGGCGTCCACGGCCGCAGCGGCCTCGCGCAGACCCTGCGTTACCTGAACCGGTTATCCG
GCCCCTTCCTGGATCGTTTTGACCTGTCCATCGAGGTGCCGCTGCTGCCGCCGGGAATGCTGCGCCGGCAGAACCCGGCG
GGCGAGACCAGCGCGATGGTGCGCGCCAGGGTGCAAGCGGCGCGCGACATCCAGCTGCGGCGCGGCCGGAAAATCAATGC
GTATCTCAATAACCAGGAAGTTGCATTACATTGCCGGCTTGCTGAAGAGGACGCGATTTTCCTGGAAGAGGTGATGGAAA
CGCTGGGTTTGTCGGTACGCGCCTGGCACCGGACGCTCAAGGTTGCCCGAACGCTGGCGGATTTGGCGGGCGCGGCCGAA
ATACAGCGCGATCATCTGGCGGAGGCCGTCAGCTATCGCACCATTGATCGTCTGCTGCAACAGCTTTGGCGGCACATGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.858

99.803

0.617
  comM Glaesserella parasuis strain SC1401

61.341

100

0.613
  comM Vibrio cholerae strain A1552

61.554

99.014

0.609
  comM Vibrio campbellii strain DS40M4

61.155

99.014

0.606
  comM Legionella pneumophila str. Paris

49.698

98.028

0.487
  comM Legionella pneumophila strain ERS1305867

49.698

98.028

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.631

100

0.464

Multiple sequence alignment