Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACH75_RS19905 Genome accession   NZ_AP027933
Coordinates   4269404..4270918 (+) Length   504 a.a.
NCBI ID   WP_338773021.1    Uniprot ID   -
Organism   Aeromonas veronii strain VA7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4264404..4275918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH75_RS19890 (VAWG002_39380) - 4266140..4267084 (-) 945 WP_338773016.1 branched-chain amino acid transaminase -
  AACH75_RS19895 (VAWG002_39390) ilvM 4267097..4267375 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  AACH75_RS19900 (VAWG002_39400) ilvG 4267372..4269018 (-) 1647 WP_338773018.1 acetolactate synthase 2 catalytic subunit -
  AACH75_RS19905 (VAWG002_39410) comM 4269404..4270918 (+) 1515 WP_338773021.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACH75_RS19910 (VAWG002_39420) - 4271045..4271944 (+) 900 WP_043823224.1 acyltransferase -
  AACH75_RS19915 (VAWG002_39430) - 4271951..4272916 (+) 966 WP_338773025.1 acyltransferase -
  AACH75_RS19920 (VAWG002_39440) - 4272841..4273347 (-) 507 WP_338773027.1 DUF523 domain-containing protein -
  AACH75_RS19925 (VAWG002_39450) - 4273344..4273994 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  AACH75_RS19930 (VAWG002_39460) - 4274069..4274704 (+) 636 WP_338773029.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54584.49 Da        Isoelectric Point: 7.6884

>NTDB_id=102926 AACH75_RS19905 WP_338773021.1 4269404..4270918(+) (comM) [Aeromonas veronii strain VA7]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDQQSSESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRARVLAARERMLSRNGKLNNLLDSREIEDICRLSVQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=102926 AACH75_RS19905 WP_338773021.1 4269404..4270918(+) (comM) [Aeromonas veronii strain VA7]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCAGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTCCGCAGCGCCCTGC
TCAACGGTAATTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGACCTACCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCATGAATTTTT
GGGCGAATTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCCGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTTACCGCCTGGCTGGCCGGTCAGTACGAACTGCCGCTGCCGGATCAACAAAGCTCGGAGAGCCTGCCCGATGT
GCCGGACCTGCAGGATGTTATCGGCCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGATTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCGGCGGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTATTTCTCGACGAGCTGCCAGAATTTGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCACTGGAGACG
GGGCACATCACCATCAGCCGGGCCGCCCGTCAGGTCGATTTTCCCGCTCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCTGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTCACCGGCAAGGCGGAGCGAGGG
GAGTCGAGCCAACAGATCCGCGCTCGGGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCGGTGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.889

100

0.639
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464

Multiple sequence alignment