Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACH72_RS13790 Genome accession   NZ_AP027931
Coordinates   3020979..3022493 (+) Length   504 a.a.
NCBI ID   WP_010635710.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain VA6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3015979..3027493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH72_RS13775 (VAWG001_26760) - 3017743..3018687 (-) 945 WP_213344197.1 branched-chain amino acid transaminase -
  AACH72_RS13780 (VAWG001_26770) ilvM 3018700..3018951 (-) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  AACH72_RS13785 (VAWG001_26780) ilvG 3018948..3020594 (-) 1647 WP_042050036.1 acetolactate synthase 2 catalytic subunit -
  AACH72_RS13790 (VAWG001_26790) comM 3020979..3022493 (+) 1515 WP_010635710.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACH72_RS13795 (VAWG001_26800) - 3022609..3023523 (+) 915 WP_017787026.1 acyltransferase -
  AACH72_RS13800 (VAWG001_26810) - 3023517..3024470 (+) 954 WP_338713310.1 acyltransferase -
  AACH72_RS13805 (VAWG001_26820) - 3024416..3024901 (-) 486 WP_338713311.1 DUF523 domain-containing protein -
  AACH72_RS13810 (VAWG001_26830) - 3025002..3025652 (-) 651 WP_005306829.1 DNA mismatch repair protein MutT -
  AACH72_RS13815 (VAWG001_26840) - 3025728..3026363 (+) 636 WP_338713312.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54674.58 Da        Isoelectric Point: 7.2854

>NTDB_id=102892 AACH72_RS13790 WP_010635710.1 3020979..3022493(+) (comM) [Aeromonas dhakensis strain VA6]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHAAI
EREHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=102892 AACH72_RS13790 WP_010635710.1 3020979..3022493(+) (comM) [Aeromonas dhakensis strain VA6]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATAGCGGCCCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAATATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGACCGGGTGCGCAGTGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAGCACATCACGGTCAATCTGGCTCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTTGATCACGAATTTTT
AGGCGAGCTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCCGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAGGTACGCACCGCCCATCAGTTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAATACGAGCTGCCGCTGCCGGATCCCCAGACCACGGAGGCCCTGCCCGATGT
GCCGGATCTGCAGGACGTGATCGGCCAATCCCAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATTCTGCCACCCCTTAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCTCGGGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGCGCCTCGGCCGTGGCGCTGGTGGGCGGTGGCAGCCACCCGAGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAAACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACTTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCCGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGAGCGGGTGCTGGGCGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAATTT
GCTTGATAGTCGTGAAATCGAAGAAATTTGCCGATTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATTCAGAAGC
TTGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCGCCATC
GAAAGAGAGCACCTGATTGAGGCGCTCGGCTATCGGGCCATGGATCGGCTGCTGTCACGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Vibrio campbellii strain DS40M4

62.55

99.603

0.623
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466

Multiple sequence alignment