Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QUE84_RS01195 Genome accession   NZ_AP027926
Coordinates   255035..256555 (-) Length   506 a.a.
NCBI ID   WP_223689990.1    Uniprot ID   -
Organism   Escherichia fergusonii strain 30038     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 250035..261555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE84_RS01185 (Ef30038_02160) hdfR 253714..254553 (-) 840 WP_000379253.1 HTH-type transcriptional regulator HdfR -
  QUE84_RS01190 (Ef30038_02170) maoP 254672..255010 (+) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  QUE84_RS01195 (Ef30038_02180) comM 255035..256555 (-) 1521 WP_223689990.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QUE84_RS01200 ilvL 256908..257006 (+) 99 WP_001311244.1 ilv operon leader peptide -
  QUE84_RS01205 ilvX 257093..257143 (+) 51 WP_001387183.1 peptide IlvX -
  QUE84_RS01210 (Ef30038_02190) ilvG 257146..258792 (+) 1647 WP_223689989.1 acetolactate synthase 2 catalytic subunit -
  QUE84_RS01215 (Ef30038_02200) ilvM 258789..259052 (+) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  QUE84_RS01220 (Ef30038_02210) ilvE 259072..260001 (+) 930 WP_000208520.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55079.29 Da        Isoelectric Point: 7.8956

>NTDB_id=102853 QUE84_RS01195 WP_223689990.1 255035..256555(-) (comM) [Escherichia fergusonii strain 30038]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ESSATVKQRVMAARERQLKRQNKLNARLDSPEIRQFCKLESEDALWLEETLIHLGLSIRAWQRLLKVARTIADIAQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=102853 QUE84_RS01195 WP_223689990.1 255035..256555(-) (comM) [Escherichia fergusonii strain 30038]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCACGCGATCGCGTACGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
TGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGTGCAATCTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGACAACGAAGATGAAGTGGGGCTAATTAATGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCATTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGACACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGGGCCAAAATAACCTACCCGGCCCGTTTCCAGCTTGTTGCGGCGATGAACCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAACGCTGCGTTATCTCAACCGACTCTCTGGCC
CCTTTCTCGACCGTTTCGATCTCTCACTGGAGATCCCATTACCGCCTCCCGGAATTTTGAGTAAAGCGGTAGTGCAGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTAAAGCGGCAGAATAAACTGAATGCCAG
GCTGGATAGTCCGGAAATACGGCAATTCTGCAAGCTTGAGAGCGAAGATGCGTTGTGGCTGGAAGAAACGCTAATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTACTGAAAGTTGCACGAACCATTGCTGATATTGCTCAGTCTGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.445

Multiple sequence alignment