Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB4O92_RS21800 Genome accession   NZ_CP163023
Coordinates   4557645..4559165 (+) Length   506 a.a.
NCBI ID   WP_126504102.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain W180     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4552645..4564165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O92_RS21775 (AB4O92_21775) ilvE 4554212..4555141 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  AB4O92_RS21780 (AB4O92_21780) ilvM 4555160..4555423 (-) 264 WP_126504106.1 acetolactate synthase 2 small subunit -
  AB4O92_RS21785 (AB4O92_21785) ilvG 4555420..4557066 (-) 1647 WP_126504104.1 acetolactate synthase 2 catalytic subunit -
  AB4O92_RS21790 (AB4O92_21790) ilvX 4557069..4557119 (-) 51 WP_166792073.1 peptide IlvX -
  AB4O92_RS21795 (AB4O92_21795) ilvL 4557206..4557304 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AB4O92_RS21800 (AB4O92_21800) comM 4557645..4559165 (+) 1521 WP_126504102.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB4O92_RS21805 (AB4O92_21805) - 4559193..4559531 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  AB4O92_RS21810 (AB4O92_21810) hdfR 4559650..4560471 (+) 822 WP_022649779.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54680.62 Da        Isoelectric Point: 7.3360

>NTDB_id=1028506 AB4O92_RS21800 WP_126504102.1 4557645..4559165(+) (comM) [Enterobacter hormaechei strain W180]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTSGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENEEVVADSPDDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
DALESAAIFSLVSSISLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSAAVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1028506 AB4O92_RS21800 WP_126504102.1 4557645..4559165(+) (comM) [Enterobacter hormaechei strain W180]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCCGAAACGACCGTTAAGGAGGCCAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGTCAGGGTTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GGCAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTCAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGAGGAGGTAGTGGCAGATTCACC
CGATGACCTCAGCGATATTATGGGTCAGGAACAGGGTAAGCGGGCGTTAGAAATAACGGCCGCGGGTGGGCATAACCTGC
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGGTTGAGCGGCCTGCTGCCCCCCCTCAATAATCAC
GACGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCAATATCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCGCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGCTCAATTCCCGGACCGGGTGAAATCTCACTGGCAC
ACAACGGCATTCTGTTCCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCGTTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGCGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCAACGGGCCATTATCAGGGCAACCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTTCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCACCGCCCGGTCTGCTGAGGCAAACCGGTATCAAAGGC
GAAAGCTCAGCAGCGGTGCGAGAACGGGTTATTGCGGCTCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGCTCTCTCAACGCCGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGTTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCTGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGACATTTGCAGGAGGCATTAAGCTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.939

100

0.593
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Vibrio campbellii strain DS40M4

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.431

Multiple sequence alignment