Detailed information    

insolico Bioinformatically predicted

Overview


Name   comM   Type   Machinery gene
Locus tag   AB4O95_RS21960 Genome accession   NZ_CP163007
Coordinates   4563444..4564964 (+) Length   506 a.a.
NCBI ID   WP_048975639.1    Uniprot ID   -
Organism   Enterobacter asburiae strain W207     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context


Location: 4558444..4569964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O95_RS21935 (AB4O95_21935) ilvE 4560010..4560939 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  AB4O95_RS21940 (AB4O95_21940) ilvM 4560958..4561221 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  AB4O95_RS21945 (AB4O95_21945) ilvG 4561218..4562864 (-) 1647 WP_064673098.1 acetolactate synthase 2 catalytic subunit -
  AB4O95_RS21950 (AB4O95_21950) ilvX 4562867..4562917 (-) 51 WP_166792073.1 peptide IlvX -
  AB4O95_RS21955 (AB4O95_21955) ilvL 4563004..4563102 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AB4O95_RS21960 (AB4O95_21960) comM 4563444..4564964 (+) 1521 WP_048975639.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB4O95_RS21965 (AB4O95_21965) - 4564995..4565333 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  AB4O95_RS21970 (AB4O95_21970) hdfR 4565452..4566273 (+) 822 WP_094935534.1 HTH-type transcriptional regulator HdfR -

Sequence


Protein


Download         Length: 506 a.a.        Molecular weight: 54951.91 Da        Isoelectric Point: 6.8204

>NTDB_id=1028436 AB4O95_RS21960 WP_048975639.1 4563444..4564964(+) (comM) [Enterobacter asburiae strain W207]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1028436 AB4O95_RS21960 WP_048975639.1 4563444..4564964(+) (comM) [Enterobacter asburiae strain W207]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCTGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTCACAGGCGCATTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCCGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGGCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGTTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCGGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCAGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGGCGATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAACTGCCTGAATTTGAGCGCCGTGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGAGAGCCAAAATAAGCTATCCCGCACAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACACCAGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCAGCCCAGACACGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCACTTAACGTTGAGGATGCGGGATGGCTGGAAGAGACGTTAACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTAGAGGGGTGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585

  comM Vibrio cholerae strain A1552

58.566

99.209

0.581

  comM Glaesserella parasuis strain SC1401

57.988

100

0.581

  comM Vibrio campbellii strain DS40M4

58.449

99.407

0.581

  comM Legionella pneumophila str. Paris

50.101

98.221

0.492

  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492

  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439


Multiple sequence alignment