Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QUE46_RS00750 Genome accession   NZ_AP027922
Coordinates   156036..157544 (+) Length   502 a.a.
NCBI ID   WP_286245800.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. MM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 151036..162544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE46_RS00710 (PspMM1_01330) - 151617..152240 (+) 624 WP_286245797.1 dUTP diphosphatase -
  QUE46_RS00715 (PspMM1_01340) yrfG 152249..152896 (-) 648 WP_286245798.1 GMP/IMP nucleotidase -
  QUE46_RS00720 (PspMM1_01350) nudE 152959..153531 (+) 573 WP_286247636.1 ADP compounds hydrolase NudE -
  QUE46_RS00725 (PspMM1_01360) cysQ 153524..154315 (+) 792 WP_286245799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QUE46_RS00745 (PspMM1_01370) - 155388..156002 (+) 615 WP_138541545.1 trimeric intracellular cation channel family protein -
  QUE46_RS00750 (PspMM1_01380) comM 156036..157544 (+) 1509 WP_286245800.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QUE46_RS00755 (PspMM1_01390) - 157643..158347 (-) 705 WP_286245801.1 response regulator transcription factor -
  QUE46_RS00760 (PspMM1_01400) - 158524..161019 (-) 2496 WP_286245802.1 S9 family peptidase -
  QUE46_RS00765 (PspMM1_01410) - 161104..162180 (+) 1077 WP_286245803.1 CNNM domain-containing protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55147.12 Da        Isoelectric Point: 6.9173

>NTDB_id=102829 QUE46_RS00750 WP_286245800.1 156036..157544(+) (comM) [Pseudoalteromonas sp. MM1]
MSLARIYSRAQVGINAPEVIVEVHLGNGLPAFHIVGLPEASVKESKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQVVCPDIHKYEFYGELALNGEVRGVNAILPSVLAAKEQDRCCFLPFTNDSLASLVNGVKRKAVNSL
QEVWGDLLNQQPLPLNIEYPDCAQSPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPTMS
DDEAISTAALYSIIGQSIDLNNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGSVVISRAARQMEFPAQFQLIAALNPSPTGCHNDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLTSVELQSTQPEE
SSAQVRQRVEAAYHIQLKRQGKVNARLNNKEMNIHCELAPAELQFLARASEKLSLSPRSYHRVIKVARTISDLKGAEHIS
LEELKEALNYRAFERLLAQLTK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=102829 QUE46_RS00750 WP_286245800.1 156036..157544(+) (comM) [Pseudoalteromonas sp. MM1]
ATGTCGCTAGCTCGCATTTATTCTCGTGCCCAAGTAGGTATAAACGCCCCCGAGGTTATTGTAGAGGTACACCTTGGGAA
TGGTTTGCCAGCTTTTCATATTGTAGGGCTTCCTGAGGCCTCAGTTAAAGAATCAAAAGATAGGGTGCGTAGCGCCCTAG
AAAACTCACAATTTGGTTTTCCCGATCAACGTATCACCGTAAATTTAGCCCCTGCCGATTTACCTAAAGATGGAGGGCGC
TTTGACTTAGCTATTGCCGTAGGTATTTTAGTGGCCTCTGGGCAGGTTGTTTGCCCTGATATACATAAATATGAGTTTTA
CGGAGAGCTTGCCCTTAATGGCGAAGTGCGTGGTGTAAATGCCATTTTGCCCTCTGTACTTGCAGCAAAAGAACAAGACC
GCTGCTGCTTTTTACCTTTTACCAACGATAGCCTCGCAAGTTTGGTGAACGGCGTTAAACGTAAAGCGGTTAATTCGCTG
CAAGAAGTGTGGGGCGATTTACTAAATCAGCAGCCGCTGCCTTTAAATATTGAATACCCTGATTGCGCCCAGTCTCCCGA
CTTTTTACTCGATTTAAGTGATGTTAAAGGCCAACCCGGTGCTAAGCGAGTGCTAGAAATAGCTGCAGCTGGAGGCCATA
ACCTACTTTTTTTAGGCCCGCCTGGTACGGGCAAATCTATGCTAGCGCAGCGTATGGCAACGATAATGCCAACCATGTCG
GACGATGAGGCAATATCAACGGCTGCACTGTATTCTATTATTGGCCAATCTATTGACTTAAATAATTGGCGCCAGCGGCC
GTTTCGAAACCCGCACCACACTTGCTCAGCCGTTGCTTTAGTGGGTGGTTCTTCAAACCCTAAGCCGGGTGAAATTTCAC
TTGCGCATAACGGGGTATTGTTTTTGGACGAGCTTCCGGAATTCGAACGTAAGGTACTTGATTCTCTGCGTGAGCCTATG
GAAACCGGTTCTGTGGTTATCTCCCGTGCTGCAAGGCAAATGGAGTTTCCGGCGCAGTTTCAGCTAATAGCTGCACTCAA
CCCAAGTCCGACTGGATGCCATAATGATAAGCGAGCAACGCCTGACCAAGTTATGCGTTATTTATCTCGCGTGTCAGGCC
CGTTTATCGATCGTATCGATTTGCAAATTGAGCTGCCACGTTTAACCAGTGTTGAGCTGCAAAGTACTCAGCCTGAAGAA
AGCAGTGCTCAAGTTAGGCAGAGGGTTGAAGCTGCATATCATATTCAGTTAAAACGCCAAGGTAAGGTTAACGCGCGTCT
AAATAACAAAGAAATGAATATACACTGTGAGCTTGCGCCTGCTGAGTTGCAGTTTTTAGCACGCGCTAGCGAAAAGTTGT
CGTTATCACCGCGCTCTTACCATAGGGTCATTAAAGTGGCGCGTACAATTAGTGATTTAAAAGGTGCAGAGCATATTAGT
TTAGAAGAGCTAAAAGAGGCGCTAAATTATCGTGCTTTTGAGCGGTTACTAGCGCAGTTAACTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.548

100

0.568
  comM Haemophilus influenzae Rd KW20

54.617

100

0.554
  comM Glaesserella parasuis strain SC1401

54.134

100

0.548
  comM Vibrio campbellii strain DS40M4

54.167

100

0.544
  comM Legionella pneumophila str. Paris

50.302

99.004

0.498
  comM Legionella pneumophila strain ERS1305867

50.302

99.004

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.292

100

0.426

Multiple sequence alignment