Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4L27_RS07635 Genome accession   NZ_CP162907
Coordinates   1633138..1633674 (-) Length   178 a.a.
NCBI ID   WP_012841367.1    Uniprot ID   A0AAE4M8V6
Organism   Vibrio diabolicus strain 3098     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1628138..1638674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS07615 (AB4L27_07615) - 1628457..1628789 (-) 333 WP_046873588.1 hypothetical protein -
  AB4L27_RS07620 (AB4L27_07620) gspM 1628782..1629432 (-) 651 WP_104969847.1 type II secretion system protein GspM -
  AB4L27_RS07625 (AB4L27_07625) - 1629429..1630874 (-) 1446 WP_104969848.1 MSHA biogenesis protein MshI -
  AB4L27_RS07630 (AB4L27_07630) csrD 1630886..1632895 (-) 2010 WP_048626836.1 RNase E specificity factor CsrD -
  AB4L27_RS07635 (AB4L27_07635) ssb 1633138..1633674 (-) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  AB4L27_RS07640 (AB4L27_07640) qstR 1633952..1634596 (+) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  AB4L27_RS07645 (AB4L27_07645) galU 1634755..1635627 (+) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AB4L27_RS07650 (AB4L27_07650) uvrA 1635777..1638599 (+) 2823 WP_104969851.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19791.83 Da        Isoelectric Point: 4.9164

>NTDB_id=1027971 AB4L27_RS07635 WP_012841367.1 1633138..1633674(-) (ssb) [Vibrio diabolicus strain 3098]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1027971 AB4L27_RS07635 WP_012841367.1 1633138..1633674(-) (ssb) [Vibrio diabolicus strain 3098]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGTCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAGCAGGCTCCGCAGCAA
CCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.815
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.601
  ssb Neisseria meningitidis MC58

46.927

100

0.472
  ssb Neisseria gonorrhoeae MS11

43.85

100

0.461

Multiple sequence alignment