Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB4073_RS18065 Genome accession   NZ_CP162643
Coordinates   3835429..3836916 (+) Length   495 a.a.
NCBI ID   WP_368678167.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3830429..3841916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS18040 (AB4073_18040) ribD 3831344..3832429 (-) 1086 WP_368678166.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AB4073_RS18045 (AB4073_18045) nrdR 3832445..3832903 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  AB4073_RS18050 (AB4073_18050) - 3833067..3834461 (-) 1395 WP_016144094.1 ammonium transporter -
  AB4073_RS18055 (AB4073_18055) glnK 3834519..3834857 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  AB4073_RS18060 (AB4073_18060) - 3835136..3835363 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  AB4073_RS18065 (AB4073_18065) comM 3835429..3836916 (+) 1488 WP_368678167.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB4073_RS18070 (AB4073_18070) - 3836931..3838364 (-) 1434 WP_368678168.1 PLP-dependent aminotransferase family protein -
  AB4073_RS18075 (AB4073_18075) - 3838476..3839252 (+) 777 WP_125699885.1 aldolase -
  AB4073_RS18080 (AB4073_18080) - 3839268..3840146 (+) 879 WP_368678169.1 dihydrodipicolinate synthase family protein -
  AB4073_RS18085 (AB4073_18085) - 3840190..3841002 (-) 813 WP_031947143.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54568.72 Da        Isoelectric Point: 7.2113

>NTDB_id=1027784 AB4073_RS18065 WP_368678167.1 3835429..3836916(+) (comM) [Acinetobacter lactucae strain 128-92]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLFPLDNGQDISHLPDLECYPVNHL
KEVCEHFLGTKSLSLIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QEMLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAILDSISQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1027784 AB4073_RS18065 WP_368678167.1 3835429..3836916(+) (comM) [Acinetobacter lactucae strain 128-92]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTAAGTCA
AGGCTTGCCTTCTCTTACCATTGTCGGGCTAGCAGAAGCGGCGGTAAGAGAAAGTAAAGATCGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAACGGCTGACCATTAACCTTGCACCAGCAGATTTGCCCAAAGATGGGTCACGT
CTAGATTTACCGATTGCCGTAGGCATTTTAATTGCGTCTGGTCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCGCTCGATGGTCATGTAAGGCCAGTGTCAGGTACTTTAACTTTGGCCATGGCGTGTCAACAAGCCAAGC
ATAAAATGCTTTTTCCCCTTGATAATGGTCAAGATATTAGCCACTTACCTGACCTTGAATGTTATCCAGTGAACCACTTA
AAAGAAGTGTGTGAACATTTTCTGGGCACAAAATCGCTATCATTGATTGAACCTGCAACGACTTCAAACCAAATGCCCTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGCCCACGTCGCGCACTAGAAATAGCTGCCGCAGGAGGCCATTCTC
TGCTCTTTAAAGGGCCACCAGGTACAGGTAAGACTTTACTCGCTTCACGCCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAAGAAATGCTTGAAGTTGCGAGTATTTATTCCATTTCAAACACACCGCATACGTTTGGCCAGCGCCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTGGTTGGGGGCGGTTCGCATCCTAAACCAGGTGAAATTACTTTATCTCATTTAG
GTGTGCTCTTCTTAGATGAACTTCCAGAATTTGATAGAAAAGTGCTAGAAGTCTTACGCCAGCCACTTGAATCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACCTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCCTGCCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGCTCACCAGAGAGTATTAAACGTTATCAAAACCGTATATCGGGGC
CGTTACTCGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCGCT
TTCACCGAAGCAACTTGAGCAATATGCTATCCTTGATAGTATTTCACAGCGAATGATTGAAATGGCACAGCAACGTTTAA
ATCTATCAGCTCGTGCTTATCACCGTGTTTTACGGGTTGCTCGTACCATTGCTGATTTGGCTCAAAGTGAAATGATTCAA
AGTCCGCACCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Vibrio campbellii strain DS40M4

48.081

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.469

Multiple sequence alignment