Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB4073_RS08685 Genome accession   NZ_CP162643
Coordinates   1837389..1838435 (-) Length   348 a.a.
NCBI ID   WP_016140739.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1832389..1843435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS08650 (AB4073_08650) - 1832635..1833135 (+) 501 WP_031948567.1 OmpH family outer membrane protein -
  AB4073_RS08655 (AB4073_08655) lpxD 1833140..1834210 (+) 1071 WP_216968227.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  AB4073_RS08660 (AB4073_08660) fabZ 1834217..1834702 (+) 486 WP_002115603.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AB4073_RS08665 (AB4073_08665) lpxA 1834699..1835487 (+) 789 WP_031948565.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  AB4073_RS08670 (AB4073_08670) - 1835541..1836419 (-) 879 WP_182004699.1 YbgF trimerization domain-containing protein -
  AB4073_RS08680 (AB4073_08680) - 1836844..1837326 (-) 483 WP_239935538.1 regulatory protein RecX -
  AB4073_RS08685 (AB4073_08685) recA 1837389..1838435 (-) 1047 WP_016140739.1 recombinase RecA Machinery gene
  AB4073_RS08690 (AB4073_08690) - 1838581..1839009 (-) 429 WP_368678776.1 RNA-binding S4 domain-containing protein -
  AB4073_RS08695 (AB4073_08695) - 1838993..1839679 (-) 687 WP_368678777.1 HAD-IA family hydrolase -
  AB4073_RS08700 (AB4073_08700) - 1840103..1840396 (+) 294 WP_061874536.1 hypothetical protein -
  AB4073_RS08705 (AB4073_08705) - 1840434..1840970 (-) 537 WP_182004695.1 GNAT family N-acetyltransferase -
  AB4073_RS08710 (AB4073_08710) gigD 1841001..1841450 (-) 450 WP_004791887.1 Lrp/AsnC family transcriptional regulator GigD -
  AB4073_RS08715 (AB4073_08715) kynU 1841598..1842848 (+) 1251 WP_368678778.1 kynureninase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37679.11 Da        Isoelectric Point: 4.9320

>NTDB_id=1027762 AB4073_RS08685 WP_016140739.1 1837389..1838435(-) (recA) [Acinetobacter lactucae strain 128-92]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TRVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIEK
VIREQLLTTGTNGAVQVEEEEEDLLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1027762 AB4073_RS08685 WP_016140739.1 1837389..1838435(-) (recA) [Acinetobacter lactucae strain 128-92]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCGCTAAGTCAAATTGAGAAACAATTTGGCAAAAATACGGTGATGCG
TCTCGGTGACAACACTGTTCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTGACTTTAGATATTGCATTGGGGATTGGCG
GTTTACCGAAAGGTCGTATCGTTGAGATTTATGGTCCAGAATCTTCTGGTAAAACCACAATGACTCTCCAAGCGATTGCA
CAATGTCAAAAAGCTGGTGGTACTTGTGCATTTATCGATGCAGAACATGCATTAGATCCACAATATGCGCGTAAACTCGG
TGTAGACATTGATAATCTACTTGTATCGCAACCTGATAACGGTGAACAAGCACTCGAGATTGCGGACATGCTAGTTCGCT
CTGGTGCAATTGATTTAATCGTTGTCGACTCAGTTGCTGCTCTTACTCCTAAAGCAGAAATTGAAGGCGAAATGGGTGAC
TCCCACATGGGCTTACAAGCTCGTTTAATGAGTCAGGCACTACGTAAAATTACAGGTAATGCTAAACGCTCGAACTGTAT
GGTTATTTTCATTAACCAGATCCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAGACTACGACTGGTGGTAACGCAT
TAAAGTTCTATGCTTCTGTACGTTTAGATATCCGCCGTATTGGTCAAGTCAAAGAAGGTGATGAAATCATCGGTTCTGAA
ACTCGAGTTAAAGTTGTTAAAAACAAAATGGCTCCTCCTTTCAAAGAAGCTATTTTCCAAATCCTATACGGTAAAGGAAC
AAACCAGCTTGGCGAACTGGTAGATTTAGCTGTACAACAAGATATCGTGCAAAAAGCAGGTGCTTGGTATTCGTATCAAG
GCAATAAAATTGGTCAAGGTAAAAATAACGTTATCCGCCACTTCGAAGAAAACCCTCAAATGGCTGGAGAGATTGAAAAA
GTTATCCGTGAACAATTATTAACTACGGGTACTAATGGCGCTGTACAGGTCGAAGAGGAAGAAGAAGATCTTCTATTAGA
GTCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

96.275

100

0.966
  recA Acinetobacter baylyi ADP1

93.123

100

0.934
  recA Pseudomonas stutzeri DSM 10701

75.602

95.402

0.721
  recA Vibrio cholerae strain A1552

74.006

93.966

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

93.966

0.695
  recA Glaesserella parasuis strain SC1401

71.914

93.103

0.67
  recA Neisseria gonorrhoeae MS11

66.092

100

0.661
  recA Neisseria gonorrhoeae MS11

66.092

100

0.661
  recA Neisseria gonorrhoeae strain FA1090

66.092

100

0.661
  recA Ralstonia pseudosolanacearum GMI1000

70.122

94.253

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

98.563

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.115

0.609
  recA Helicobacter pylori strain NCTC11637

63.914

93.966

0.601
  recA Helicobacter pylori 26695

63.609

93.966

0.598
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

91.092

0.583
  recA Streptococcus mitis NCTC 12261

57.183

100

0.583
  recA Streptococcus mutans UA159

61.89

94.253

0.583
  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575
  recA Streptococcus pneumoniae R6

61.043

93.678

0.572
  recA Streptococcus pneumoniae Rx1

61.043

93.678

0.572
  recA Streptococcus pneumoniae D39

61.043

93.678

0.572
  recA Streptococcus pneumoniae TIGR4

61.043

93.678

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.529

0.569
  recA Streptococcus mitis SK321

60.736

93.678

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.816

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.241

0.546

Multiple sequence alignment