Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AB4073_RS11070 | Genome accession | NZ_CP162643 |
| Coordinates | 2351445..2351825 (-) | Length | 126 a.a. |
| NCBI ID | WP_368677642.1 | Uniprot ID | - |
| Organism | Acinetobacter lactucae strain 128-92 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2346445..2356825
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4073_RS11040 (AB4073_11040) | tadA | 2346565..2347068 (-) | 504 | WP_057106324.1 | tRNA adenosine(34) deaminase TadA | - |
| AB4073_RS11045 (AB4073_11045) | - | 2347075..2348199 (-) | 1125 | WP_079748353.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AB4073_RS11050 (AB4073_11050) | ung | 2348196..2348909 (-) | 714 | WP_016145102.1 | uracil-DNA glycosylase | - |
| AB4073_RS11055 (AB4073_11055) | - | 2348963..2349559 (-) | 597 | WP_163119584.1 | 6-carboxytetrahydropterin synthase | - |
| AB4073_RS11060 (AB4073_11060) | gspK | 2349788..2350747 (-) | 960 | WP_368677641.1 | type II secretion system minor pseudopilin GspK | - |
| AB4073_RS11065 (AB4073_11065) | xcpW | 2350747..2351445 (-) | 699 | WP_031948176.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AB4073_RS11070 (AB4073_11070) | xcpV | 2351445..2351825 (-) | 381 | WP_368677642.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AB4073_RS11075 (AB4073_11075) | - | 2351815..2352369 (-) | 555 | WP_057106321.1 | type II secretion system protein | - |
| AB4073_RS11080 (AB4073_11080) | - | 2352376..2352984 (-) | 609 | WP_014206595.1 | TetR/AcrR family transcriptional regulator | - |
| AB4073_RS11085 (AB4073_11085) | - | 2353021..2353794 (-) | 774 | WP_368677643.1 | TatD family hydrolase | - |
| AB4073_RS11090 (AB4073_11090) | - | 2353812..2354153 (-) | 342 | WP_002121335.1 | PilZ domain-containing protein | - |
| AB4073_RS11095 (AB4073_11095) | - | 2354164..2355144 (-) | 981 | WP_368677644.1 | DNA polymerase III subunit delta' | - |
| AB4073_RS11100 (AB4073_11100) | kdsB | 2355158..2355919 (-) | 762 | WP_062848588.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13989.17 Da Isoelectric Point: 9.4463
>NTDB_id=1027764 AB4073_RS11070 WP_368677642.1 2351445..2351825(-) (xcpV) [Acinetobacter lactucae strain 128-92]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGENWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKIQNGITHLVFFNYPMKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGENWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKIQNGITHLVFFNYPMKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1027764 AB4073_RS11070 WP_368677642.1 2351445..2351825(-) (xcpV) [Acinetobacter lactucae strain 128-92]
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGCTAACTAA
AGTAGCCATGCAGTACACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAGTGGCTTGAAGGTACGCAAAGCAAGCAGGTTACTTCCCAAGGTGAAAATTGGCAGATT
GATAAATCTGCACAATCCACAATTAGCCCGAATGTTCAGAAAGTAGATTTGCAAATTAGTTTATATGATTCTGATAAAGG
GAAAATTCAAAATGGTATTACTCACTTAGTATTTTTTAATTATCCAATGAAAGCAAAATAA
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGCTAACTAA
AGTAGCCATGCAGTACACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAGTGGCTTGAAGGTACGCAAAGCAAGCAGGTTACTTCCCAAGGTGAAAATTGGCAGATT
GATAAATCTGCACAATCCACAATTAGCCCGAATGTTCAGAAAGTAGATTTGCAAATTAGTTTATATGATTCTGATAAAGG
GAAAATTCAAAATGGTATTACTCACTTAGTATTTTTTAATTATCCAATGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
92.857 |
100 |
0.929 |