Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB0763_RS13150 Genome accession   NZ_CP162601
Coordinates   2978986..2980512 (-) Length   508 a.a.
NCBI ID   WP_306102255.1    Uniprot ID   A0AB39HFH1
Organism   Vibrio sp. HB236076     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2973986..2985512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0763_RS13120 (AB0763_13120) - 2974524..2975315 (-) 792 WP_306102250.1 sporulation protein -
  AB0763_RS13125 (AB0763_13125) - 2975608..2975781 (+) 174 WP_306102301.1 hypothetical protein -
  AB0763_RS13130 (AB0763_13130) - 2975891..2976154 (+) 264 WP_306102251.1 DUF1040 family protein -
  AB0763_RS13135 (AB0763_13135) - 2976261..2977247 (+) 987 WP_306102252.1 serine/threonine protein kinase -
  AB0763_RS13140 (AB0763_13140) - 2977277..2977876 (+) 600 WP_306102253.1 thiol:disulfide interchange protein DsbA/DsbL -
  AB0763_RS13145 (AB0763_13145) - 2977909..2978835 (-) 927 WP_306102254.1 acyltransferase -
  AB0763_RS13150 (AB0763_13150) comM 2978986..2980512 (-) 1527 WP_306102255.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB0763_RS13155 (AB0763_13155) ilvG 2980935..2982581 (+) 1647 WP_306102256.1 acetolactate synthase 2 catalytic subunit -
  AB0763_RS13160 (AB0763_13160) ilvM 2982596..2982880 (+) 285 WP_306102257.1 acetolactate synthase 2 small subunit -
  AB0763_RS13165 (AB0763_13165) - 2982894..2983835 (+) 942 WP_306102258.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55075.17 Da        Isoelectric Point: 6.8237

>NTDB_id=1027414 AB0763_RS13150 WP_306102255.1 2978986..2980512(-) (comM) [Vibrio sp. HB236076]
MGLSIVYSRAIVGVEAPLISIEVHISNGMPGFALVGLPETTVKEAKDRVRSAIINSQFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILAASDQVPHETLSQYEFLGELALSGHLRTVKGVLPAALAAKAAARQLIVPDSNSGEAGLVDADHRSASSLL
AVCAHLSSEKPLVLKPVLKVVKETAEERDLQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPEMGDE
EAMETAAVASLVGNDIHSGNWKTRPFRSPHHSSSMAALVGGGSIPRPGEISLSHNGILFLDEMPEFERKVLDSLREPLES
GEIVISRVQGKTRFPARFQLIGALNPSPTGYYEGEQARANPQSILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDRG
EATSVVKERVNQARATMLARCGKINSRLNTREIEQYCPLVKQDAEFLEQALHQLGLSIRAYHRIIKVARTISDLNGEEQI
SRTHLCEALGYRSMDRLMKQLTEQTVWP

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1027414 AB0763_RS13150 WP_306102255.1 2978986..2980512(-) (comM) [Vibrio sp. HB236076]
ATGGGATTGTCGATAGTTTACAGCCGAGCGATTGTCGGAGTTGAAGCACCATTGATTTCAATAGAAGTGCATATCAGTAA
TGGCATGCCGGGTTTCGCTTTAGTCGGCTTGCCAGAGACCACGGTCAAAGAAGCCAAAGATCGAGTGAGAAGTGCGATCA
TCAATTCGCAATTTGAGTTTCCTAGCAAGAGGATTACCGTCAATTTGGCACCAGCGGATTTACCCAAAGAGGGCGGGCGT
TTTGATTTACCAATTGCCTTGGGGATTTTGGCTGCCTCCGATCAAGTTCCACATGAAACCTTATCTCAGTACGAGTTTTT
AGGAGAGTTAGCGCTTTCTGGCCATTTGCGCACGGTCAAAGGGGTATTGCCCGCCGCCTTAGCCGCCAAAGCCGCGGCGC
GACAATTAATCGTCCCAGACAGTAATTCCGGTGAGGCGGGCTTGGTGGATGCCGATCATCGTTCTGCATCGAGTTTATTG
GCGGTGTGCGCTCATTTATCAAGTGAAAAGCCCTTGGTCTTAAAACCGGTACTCAAGGTCGTTAAGGAGACGGCTGAAGA
GCGCGATTTACAAGACATCATCGGCCAGCAGCAAGGTAAGCGAGCATTGGAAATTGCCGCGGCGGGCGGGCACAATTTAT
TGTTTCTCGGCCCGCCTGGTACCGGGAAAACCATGTTGGCTAGTCGCTTGTGCGATTTACTGCCGGAAATGGGAGACGAA
GAGGCGATGGAAACGGCGGCTGTGGCCTCGCTGGTGGGCAATGATATCCACAGTGGCAATTGGAAAACCAGGCCATTTCG
CTCGCCTCATCACTCGAGCTCAATGGCGGCGTTAGTCGGGGGCGGCAGTATTCCTCGCCCAGGTGAGATTTCACTCTCTC
ACAATGGCATTTTGTTTCTCGATGAGATGCCGGAGTTTGAGCGTAAAGTACTGGACTCACTTCGCGAACCGTTAGAGTCC
GGAGAAATTGTGATTTCTCGTGTACAAGGAAAAACCCGCTTTCCGGCTCGCTTTCAATTGATTGGTGCGCTCAACCCCAG
CCCGACGGGGTATTATGAAGGAGAGCAAGCCAGAGCCAACCCTCAAAGCATTTTGCGCTACCTGGGGCGTTTGTCTGGTC
CTTTGCTCGATCGCTTTGATATGTCGCTAGAAATTCCATCGCTCCCCAAAGGCACATTGGCTGAAGGCGGTGACCGGGGT
GAGGCAACCTCGGTCGTAAAAGAGCGCGTCAATCAAGCCAGAGCAACGATGTTGGCGCGCTGTGGTAAGATCAACAGCCG
TCTCAATACGCGAGAAATTGAGCAGTACTGCCCATTAGTCAAACAAGATGCCGAGTTTTTAGAACAAGCTTTGCATCAGT
TAGGGCTGTCCATTCGCGCTTATCATCGCATTATTAAAGTGGCTCGCACCATCTCCGATCTCAATGGCGAAGAGCAAATT
AGCCGAACGCACCTGTGTGAAGCACTCGGCTATCGCTCGATGGATCGTTTGATGAAGCAATTAACGGAGCAAACGGTTTG
GCCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

77.909

99.803

0.778
  comM Vibrio cholerae strain A1552

77.12

99.803

0.77
  comM Haemophilus influenzae Rd KW20

63.851

100

0.64
  comM Glaesserella parasuis strain SC1401

63.065

100

0.632
  comM Legionella pneumophila str. Paris

48.387

97.638

0.472
  comM Legionella pneumophila strain ERS1305867

48.387

97.638

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.772

99.409

0.425

Multiple sequence alignment