Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB4P94_RS07380 Genome accession   NZ_CP162592
Coordinates   1642210..1643706 (-) Length   498 a.a.
NCBI ID   WP_395610007.1    Uniprot ID   -
Organism   Pseudomonas sp. B22129     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1637210..1648706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P94_RS07360 (AB4P94_07345) - 1637520..1638440 (+) 921 WP_395610003.1 LysR substrate-binding domain-containing protein -
  AB4P94_RS07365 (AB4P94_07350) - 1638608..1640584 (+) 1977 WP_395610004.1 methyl-accepting chemotaxis protein -
  AB4P94_RS07370 (AB4P94_07355) - 1640581..1641501 (-) 921 WP_395610005.1 ABC transporter six-transmembrane domain-containing protein -
  AB4P94_RS07375 (AB4P94_07360) - 1641614..1642213 (+) 600 WP_395610006.1 TetR/AcrR family transcriptional regulator -
  AB4P94_RS07380 (AB4P94_07365) comM 1642210..1643706 (-) 1497 WP_395610007.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB4P94_RS07385 (AB4P94_07370) - 1643923..1644186 (-) 264 WP_094948733.1 accessory factor UbiK family protein -
  AB4P94_RS07390 (AB4P94_07375) glnK 1644609..1644947 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  AB4P94_RS07395 (AB4P94_07380) - 1644983..1646323 (+) 1341 WP_395610008.1 ammonium transporter -
  AB4P94_RS07400 (AB4P94_07385) - 1646533..1646958 (+) 426 WP_395610009.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AB4P94_RS07405 (AB4P94_07390) sutA 1647061..1647393 (+) 333 WP_395610010.1 transcriptional regulator SutA -
  AB4P94_RS07410 (AB4P94_07395) - 1647573..1648274 (-) 702 WP_395610011.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53399.68 Da        Isoelectric Point: 8.0464

>NTDB_id=1027312 AB4P94_RS07380 WP_395610007.1 1642210..1643706(-) (comM) [Pseudomonas sp. B22129]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNCALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPSLMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGQVPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMSEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPTQQP
GDSTAKASAEVAEARERQQKRQGCANAFLDLPGLRAHCQLAKADEGWLESACERLTLSLRAAHRLLKVARTLADLEQVEN
IARHHLAEALQYRPAALN

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1027312 AB4P94_RS07380 WP_395610007.1 1642210..1643706(-) (comM) [Pseudomonas sp. B22129]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAAATCGGCGTCGAAGCCCCCGCCGTCACCGTCGAAGTGCACATGGCCAA
TGGGCTGCCATCCCTGACGCTGGTCGGCCTGCCGGAAACCGCCGTGAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAACTGCGCGCTGCAATACCCTGCGCGGCGCATTACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCCCTGGGGATTCTGGCAGCCAGTGTGCAAGTGCCGTCATTGATGCTCGACGACGTGGAATGCTT
GGGGGAATTGGCGTTGTCCGGCGAGGTGCGTGCGGTGAAAGGCGTGTTGCCGGCAGCACTGGCGGCACGCAAGGCCGGGC
GCACCGTGATAGTGCCGCGGGCGAATGCCGAGGAAGCGTGCCTGGCGTCAGGGTTGAAAGTGATTGCTGTGGACCACCTG
CTGCAGGTGGTCGCGCACCTGAATGGGCAGGTGCCGATTGAGCCCTACAAGTCCGACGGCTTGCTGTACTTGAACAAACC
CTACCCGGACTTGAGTGAGGTGCAAGGCCAATTGGCGGCCAAACGCGCTTTGCTGATTGCCGCAGCAGGCGCGCATAACC
TGCTGTTCAGCGGGCCACCCGGCACAGGCAAGACATTACTCGCCAGCCGCCTTCCCGGCCTGCTGCCACCACTGAGTGAG
CAGGAAGCCCTGGAGGTCGCTGCGATTCAGTCAGTTGTCAGCCTCGCACCCTTGAGCCACTGGCCGCACAGGCCTTTTCG
CCAGCCGCACCATTCTGCGTCAGGGCCCGCATTGGTAGGCGGTGGGTCGAAGCCGCAGCCTGGAGAAATCACCCTCGCCC
ATCACGGCGTGCTGTTTCTGGATGAACTGCCCGAGTTTGATCGCAAGGTGCTGGAAGTACTGCGCGAGCCATTGGAGTCG
GGGCATATCGTGATTTCCCGCGCCCGTGACCGCGTGAGTTTCCCGGCCCGTTTCCAACTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTATATGAGCGAACCCAGCGGGCGTTGCCGTTGCACGCCGGAGCAAATTCAGCGCTACCGCAACAAGCTCT
CCGGGCCGTTGCTGGACCGGATCGACTTGCACCTCACCGTCGCCCGGGAAACCACCGCGCTCAATCCGACCCAACAGCCC
GGCGACAGCACGGCAAAAGCCTCAGCAGAAGTCGCCGAAGCCCGGGAGCGCCAACAAAAGCGCCAGGGCTGTGCCAATGC
GTTTCTTGATCTGCCGGGATTACGCGCGCACTGCCAGCTGGCGAAAGCCGACGAGGGCTGGCTGGAAAGCGCCTGCGAGC
GGCTGACGTTATCGCTGCGCGCGGCCCATCGACTGCTCAAGGTCGCGCGCACCCTGGCTGACCTTGAACAGGTGGAGAAC
ATTGCCCGGCATCATTTGGCCGAGGCGCTGCAATATCGCCCAGCGGCATTGAACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.768

99.398

0.564
  comM Glaesserella parasuis strain SC1401

56

100

0.562
  comM Vibrio campbellii strain DS40M4

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

54.709

100

0.548
  comM Legionella pneumophila str. Paris

50.403

99.598

0.502
  comM Legionella pneumophila strain ERS1305867

50.403

99.598

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47

Multiple sequence alignment