Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3469_RS14840 Genome accession   NZ_CP162532
Coordinates   3135983..3136534 (-) Length   183 a.a.
NCBI ID   WP_396329092.1    Uniprot ID   -
Organism   Burkholderia anthina strain LMG 22950     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3130983..3141534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3469_RS14815 (AB3469_14815) - 3131392..3132573 (-) 1182 WP_396329087.1 acetyl-CoA C-acetyltransferase -
  AB3469_RS14820 (AB3469_14820) phaP 3132834..3133415 (-) 582 WP_396329088.1 TIGR01841 family phasin -
  AB3469_RS14825 (AB3469_14825) - 3133872..3134636 (-) 765 WP_396329089.1 ParA family protein -
  AB3469_RS14830 (AB3469_14830) - 3134708..3135331 (-) 624 WP_396329090.1 DNA-3-methyladenine glycosylase -
  AB3469_RS14835 (AB3469_14835) mug 3135318..3135869 (-) 552 WP_396329091.1 G/U mismatch-specific DNA glycosylase -
  AB3469_RS14840 (AB3469_14840) ssb 3135983..3136534 (-) 552 WP_396329092.1 single-stranded DNA-binding protein Machinery gene
  AB3469_RS14845 (AB3469_14845) - 3136646..3137836 (-) 1191 WP_396329093.1 MFS transporter -
  AB3469_RS14850 (AB3469_14850) uvrA 3138101..3140986 (+) 2886 WP_396329094.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18681.45 Da        Isoelectric Point: 5.3400

>NTDB_id=1026999 AB3469_RS14840 WP_396329092.1 3135983..3136534(-) (ssb) [Burkholderia anthina strain LMG 22950]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGAGGGGGGGDEGGYGGGYGGGGGGRGGEQAERGGGGGGRAGGAPRGGAG
GGQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1026999 AB3469_RS14840 WP_396329092.1 3135983..3136534(-) (ssb) [Burkholderia anthina strain LMG 22950]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATTCGTCTCGCAACGACCGATCGCTACAAGGACAAGGCGAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTCGCGTTTTTCGGCCGTCTCGCCGAAATCGTCAGCGAGTACCTGAAGAAGGGCTCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAAGGCCAGGACGGCCAGGATCGCTATTCGACCGAAATCGTCGCGGATCAAATGCAGAT
GCTCGGCGGCCGCGGTGCGGGCGGCGGCGGCGGTGGCGGTGACGAAGGCGGTTACGGCGGCGGCTACGGTGGTGGCGGCG
GCGGTCGCGGCGGCGAACAGGCGGAACGCGGCGGTGGCGGCGGCGGTCGTGCCGGCGGCGCGCCGCGCGGCGGTGCAGGC
GGCGGCCAGAGCCGTCCGAGCGCGCCGGCAGGCGGCGGCTTCGACGAGATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.705

100

0.514
  ssb Glaesserella parasuis strain SC1401

46.448

100

0.464
  ssb Neisseria gonorrhoeae MS11

43.646

98.907

0.432
  ssb Neisseria meningitidis MC58

43.094

98.907

0.426

Multiple sequence alignment