Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3464_RS15715 Genome accession   NZ_CP162519
Coordinates   3516162..3517655 (+) Length   497 a.a.
NCBI ID   WP_397457577.1    Uniprot ID   -
Organism   Pseudomonas asplenii strain UPB 526     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3506099..3515785 3516162..3517655 flank 377


Gene organization within MGE regions


Location: 3506099..3517655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3464_RS15670 (AB3464_15585) - 3506099..3507109 (-) 1011 WP_010445664.1 AraC family transcriptional regulator -
  AB3464_RS15675 (AB3464_15590) - 3507117..3508139 (-) 1023 WP_397457572.1 AraC family transcriptional regulator ligand-binding domain-containing protein -
  AB3464_RS15680 (AB3464_15595) - 3508486..3509295 (+) 810 WP_010445666.1 EAL domain-containing protein -
  AB3464_RS15685 (AB3464_15600) - 3509382..3510992 (+) 1611 WP_397457573.1 methyl-accepting chemotaxis protein -
  AB3464_RS15690 - 3511236..3512120 (-) 885 WP_397459822.1 methyl-accepting chemotaxis protein -
  AB3464_RS15695 - 3512139..3512909 (-) 771 Protein_3084 cache domain-containing protein -
  AB3464_RS15700 (AB3464_15610) - 3513319..3514200 (+) 882 WP_397457574.1 LysR family transcriptional regulator -
  AB3464_RS15705 (AB3464_15615) - 3514384..3515301 (-) 918 WP_397457575.1 DMT family transporter -
  AB3464_RS15710 (AB3464_15620) - 3515312..3515785 (-) 474 WP_397457576.1 hypothetical protein -
  AB3464_RS15715 (AB3464_15625) comM 3516162..3517655 (+) 1494 WP_397457577.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53232.33 Da        Isoelectric Point: 7.8882

>NTDB_id=1026846 AB3464_RS15715 WP_397457577.1 3516162..3517655(+) (comM) [Pseudomonas asplenii strain UPB 526]
MSLAIVHSRAQVGVEAPAVTVETHLANGLPSLTLVGLPETAVKESKDRVRSAILNSALEFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALALDNMECLGELALSGAIRSVQGVLPAALAARAAGRTLVVPLANAEEASLACGLTVIAVDHL
LQLVAHLNGHTPIKPFESSGLLHVGKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASHVPLTRWPQRPFRQPHHSASGPALVGGGSRPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGDPTNRCRCTPEQIQRYRNKLSGPLLDRVDLHLTVAREATALSPVKEP
GNTTAEAAERVAQARQCQQQRQGCANAFLDLEGLRQHCKLSTADENWLETACERLTLSLRAAHRLLKVARTLADLEQVEM
ISRQHLAEALQYRPGSS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1026846 AB3464_RS15715 WP_397457577.1 3516162..3517655(+) (comM) [Pseudomonas asplenii strain UPB 526]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTCGGTGTGGAAGCCCCTGCCGTCACCGTCGAAACCCATCTCGCCAA
TGGCCTGCCGAGCCTGACCCTGGTCGGGTTGCCGGAAACCGCCGTGAAGGAAAGCAAGGACCGGGTGCGCAGTGCGATCC
TCAATTCGGCCCTGGAGTTTCCCGCCCGGCGCATCACGCTGAATCTGGCTCCGGCGGACTTGCCCAAGGACGGTGGGCGC
TTCGACCTCGCCATCGCCCTGGGTATTCTCGCCGCCAGTGTGCAGGTGCCGGCGCTGGCGCTGGACAACATGGAATGTCT
GGGTGAACTGGCGCTCTCCGGTGCCATTCGTTCGGTGCAAGGAGTGTTGCCGGCAGCGCTGGCTGCACGGGCGGCCGGGC
GTACGCTGGTGGTGCCGCTGGCCAATGCCGAGGAGGCTTCACTGGCCTGTGGGTTGACGGTGATTGCGGTCGATCACCTG
CTGCAACTGGTCGCCCATCTCAACGGTCACACGCCGATCAAGCCTTTCGAGTCCAGCGGACTGCTGCATGTGGGCAAGCC
CTACCCGGACCTGAGCGAAGTACAGGGCCAACTCGCCGCCAAGCGGGCCTTGTTGATCGCCGCCGCCGGTGCCCACAATC
TCTTGTTCAGTGGCCCGCCCGGGACAGGCAAGACCCTGTTGGCCAGCCGACTACCCGGGCTGTTGCCGCCGCTGGACGAA
CATGAGGCGTTGGAAGTGGCGGCGATCCAGTCGGTCGCCAGTCATGTGCCATTGACCCGTTGGCCACAGCGGCCGTTTCG
CCAACCCCACCATTCCGCATCCGGACCGGCGCTGGTGGGTGGAGGGTCGAGGCCGCGTCCTGGCGAGATTACCCTCGCCC
ACCATGGTGTGCTGTTTCTCGATGAGTTGCCGGAGTTTGATCGCAAGGTGCTGGAAGTTTTGCGCGAGCCACTGGAGTCG
GGTCATATCGTGATTTCACGGGCCCGCGACCGGGTGCGTTTTCCGGCACGTTTCCAATTGGTGGCGGCGATGAATCCGTG
TCCCTGTGGATATCTTGGCGACCCGACCAACCGCTGCCGTTGTACACCGGAGCAGATCCAGCGCTATCGCAACAAGCTGT
CCGGCCCGTTGCTGGACCGTGTCGACCTGCACCTGACCGTCGCCCGCGAGGCCACCGCACTGAGCCCGGTCAAGGAGCCG
GGAAACACCACGGCCGAGGCCGCCGAGCGGGTTGCGCAAGCACGTCAGTGCCAGCAACAACGCCAGGGGTGTGCCAATGC
CTTTCTCGACCTGGAAGGTTTACGTCAGCACTGCAAGTTATCCACAGCCGATGAAAACTGGCTGGAAACTGCCTGTGAGC
GCCTGACCCTGTCGCTGCGGGCGGCGCATCGGTTGCTGAAGGTGGCGCGGACGTTGGCGGATCTGGAGCAGGTGGAGATG
ATCAGCCGCCAACATCTGGCGGAAGCACTGCAATATCGGCCTGGTAGTTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.97

99.598

0.567
  comM Vibrio cholerae strain A1552

56.364

99.598

0.561
  comM Haemophilus influenzae Rd KW20

54.709

100

0.549
  comM Glaesserella parasuis strain SC1401

54

100

0.543
  comM Legionella pneumophila str. Paris

50.202

99.799

0.501
  comM Legionella pneumophila strain ERS1305867

50.202

99.799

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.437

100

0.461

Multiple sequence alignment