Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB4K07_RS21865 Genome accession   NZ_CP162509
Coordinates   4797179..4798675 (-) Length   498 a.a.
NCBI ID   WP_045181398.1    Uniprot ID   A0AB39B1K6
Organism   Pseudomonas sp. Hg3Tf     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4792179..4803675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4K07_RS21840 (AB4K07_21840) - 4792881..4794314 (-) 1434 WP_101293189.1 mechanosensitive ion channel family protein -
  AB4K07_RS21845 (AB4K07_21845) - 4794414..4794914 (-) 501 WP_045181388.1 porin family protein -
  AB4K07_RS21850 (AB4K07_21850) - 4794958..4795644 (-) 687 WP_101293188.1 DUF3313 domain-containing protein -
  AB4K07_RS21855 (AB4K07_21855) - 4795774..4796250 (-) 477 WP_274071373.1 hypothetical protein -
  AB4K07_RS21860 (AB4K07_21860) - 4796247..4797005 (-) 759 WP_231353357.1 winged helix-turn-helix domain-containing protein -
  AB4K07_RS21865 (AB4K07_21865) comM 4797179..4798675 (-) 1497 WP_045181398.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB4K07_RS21870 (AB4K07_21870) - 4798856..4799635 (-) 780 WP_045181401.1 class I SAM-dependent methyltransferase -
  AB4K07_RS21875 (AB4K07_21875) - 4800035..4800337 (+) 303 WP_274071362.1 DUF6124 family protein -
  AB4K07_RS21880 (AB4K07_21880) - 4800472..4800735 (-) 264 WP_045181405.1 accessory factor UbiK family protein -
  AB4K07_RS21885 (AB4K07_21885) glnK 4801067..4801405 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  AB4K07_RS21890 (AB4K07_21890) - 4801447..4802778 (+) 1332 WP_045181417.1 ammonium transporter -
  AB4K07_RS21895 (AB4K07_21895) sutA 4803254..4803580 (+) 327 WP_045181420.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52717.41 Da        Isoelectric Point: 7.1882

>NTDB_id=1026694 AB4K07_RS21865 WP_045181398.1 4797179..4798675(-) (comM) [Pseudomonas sp. Hg3Tf]
MSLALVHSRAQVGVSAPAVSVEAHLANGLPALTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQFPSAALGELECLGELALSGAIRPVQGVLPAALAARAAGRALVIPQENAEEACLASGLVVFAVGHL
LELVAHLNGQTPLNPYAANGLMLHVRPYPDLNEVQGQQAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIQSVASHVPLSSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYLGDPTGRCRCGSDQIQRYRNKLSGPLLDRIDLHLTVAREATALSSAASE
GESSATIAAQVAVARDIQHQRQGCANAFIDLPGLRQYCGLSSADQQWLESACERLTLSLRAAHRLLKVARTLADLENAEQ
IDRSHLGEALQYRPTTST

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1026694 AB4K07_RS21865 WP_045181398.1 4797179..4798675(-) (comM) [Pseudomonas sp. Hg3Tf]
ATGTCCCTCGCCCTTGTCCACAGCCGTGCCCAAGTCGGTGTCTCAGCCCCTGCCGTCAGTGTTGAAGCGCATCTGGCCAA
CGGTTTGCCGGCGCTAACCCTGGTCGGCTTGCCAGAAGCCACGGTCAAAGAAAGCAAAGACCGCGTGCGCAGCGCGATCC
TCAATTCAGGTCTGGAATTTCCCGCCCGGCGCATCACCCTCAACCTCGCGCCGGCAGATTTACCTAAGGACGGCGGTCGT
TTCGATCTGGCAATTGCCTTAGGCATTCTTGCCGCCAACGGGCAGTTTCCAAGCGCTGCCCTTGGCGAGCTGGAATGCCT
CGGCGAACTCGCCCTGTCCGGGGCCATACGGCCGGTGCAAGGTGTACTGCCCGCAGCCTTGGCAGCACGCGCCGCCGGGC
GCGCGTTGGTAATCCCACAAGAAAATGCGGAGGAAGCCTGCCTGGCCTCAGGGTTGGTGGTGTTTGCAGTCGGGCACCTG
CTGGAATTGGTGGCCCACCTCAACGGACAGACGCCACTCAATCCCTACGCGGCTAATGGTTTGATGCTGCACGTTCGCCC
CTACCCGGACCTGAATGAAGTTCAGGGCCAGCAAGCAGCCAAGCGTGCCCTACTGGTCGCCGCCGCGGGTGCACACAATT
TGCTCTTCAGCGGCCCGCCGGGTACCGGTAAAACCTTACTCGCCAGCCGTCTGCCCGGCCTGTTGCCGCCGCTCGATGAG
CGCGAAGCACTGGAAGTGGCAGCCATTCAATCAGTGGCCAGTCATGTGCCGCTGAGTAGCTGGCCACAGCGACCGTTCAG
ACACCCTCACCACTCGGCGTCCGGCGCGGCGCTGGTGGGTGGCGGCAGCCGACCGCAACCTGGCGAGATTACCCTCGCCC
ATCATGGCGTGCTGTTTCTGGATGAGTTGCCGGAGTTCGAACGGCGGGTGCTGGAGGTGTTGCGCGAGCCACTGGAGTCA
GGCGAGATCGTTATCGCTCGGGCCAAAGACAAAATCCGCTTCCCGGCACGCTTTCAACTGGTCGCCGCGATGAATCCCTG
CCCCTGTGGATATCTGGGTGATCCCACCGGGCGCTGTCGCTGTGGCAGTGATCAGATTCAGCGTTATCGCAACAAGCTCT
CTGGCCCTTTGCTCGACCGCATCGACCTGCACCTGACTGTCGCTCGCGAAGCCACGGCGTTGTCGTCGGCTGCCAGCGAG
GGCGAGAGCAGCGCCACTATTGCAGCGCAGGTCGCCGTTGCCCGTGATATCCAGCACCAGCGTCAGGGATGCGCCAATGC
CTTTATCGACTTGCCGGGGCTACGCCAGTATTGCGGACTGTCCAGCGCCGACCAGCAGTGGCTGGAAAGTGCCTGCGAGC
GCCTTACGCTGTCGCTGCGTGCAGCACATCGGCTGTTGAAGGTGGCCCGGACGCTGGCCGATCTTGAAAACGCCGAACAA
ATTGACCGGAGCCATCTTGGCGAGGCACTGCAGTACCGGCCGACAACTTCGACGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.024

100

0.56
  comM Vibrio cholerae strain A1552

56.162

99.398

0.558
  comM Haemophilus influenzae Rd KW20

54.291

100

0.546
  comM Glaesserella parasuis strain SC1401

52.695

100

0.53
  comM Legionella pneumophila str. Paris

50.101

99.799

0.5
  comM Legionella pneumophila strain ERS1305867

50.101

99.799

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.414

100

0.468

Multiple sequence alignment